SMTL ID : 5qbz.1 (1 other biounit)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x B8Y: N-{[2-chloro-5-(4-{3-[4-(6-chloro-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propyl}-3-oxo-3,4-dihydropyrazin-2-yl)phenyl]methyl}-4-fluorobenzamide(Non-covalent)

B8Y.1: 13 residues within 4Å: Chain A: G.63, K.65, N.68, G.69, G.70, F.71, M.72, T.74, V.163, N.164, H.165, G.166, F.212 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.71, A:F.71, A:F.71, A:F.71, A:F.71, A:T.74, A:V.163, A:F.212 Hydrogen bonds: A:G.70 Water bridges: A:G.70 pi-Stacking: A:F.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin S

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