SMTL ID : 5qcj.2 (2 other biounits)

Crystal structure of human Cathepsin-S with bound ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x BJY: 5-hydroxy-3-{1-[(2S)-2-hydroxy-3-{5-(methylsulfonyl)-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-1-yl}propyl]piperidin-4-yl}-1H-pyrrolo[3,2-c]pyridin-5-ium(Non-covalent)

BJY.1: 17 residues within 4Å: Chain A: W.27, E.60, K.61, Y.62, G.63, G.70, F.71, M.72, T.74, V.137, G.138, N.162, V.163, N.164, H.165, G.166, F.212 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.71, A:T.74, A:V.163, A:F.212 Hydrogen bonds: A:N.162, A:V.163 pi-Stacking: A:F.71, A:F.212 Halogen bonds: A:V.137

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: Q.20, G.24, A.25, S.26, N.164, H.165 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.20, A:S.26, A:S.26 Water bridges: A:Q.20, A:C.23, A:G.24, A:W.27 Salt bridges: A:H.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bembenek, S.D. et al., Crystal structure of human Cathepsin-S with bound ligand. To be published

Release Date

2017-12-20

Peptides

Cathepsin S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cathepsin S

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