SMTL ID : 5qq8.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOOA000563a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52 Water bridges: A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93, A:R.110, A:R.110 Salt bridges: A:K.50, A:R.53 SO4.2: 3 residues within 4Å: Chain A: Q.23, K.27, H.143 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:Q.23, B:K.160 Salt bridges: A:K.27, A:H.143, B:K.160 SO4.7: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52 Water bridges: B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93, B:R.110, B:R.110 Salt bridges: B:K.50, B:R.53 SO4.8: 3 residues within 4Å: Chain B: Q.23, K.27, H.143 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:K.160, B:Q.23, B:Q.23 Salt bridges: A:K.160, B:K.27, B:H.143

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.239, S.336, L.337 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.239 ACT.9: 3 residues within 4Å: Chain B: R.239, S.336, L.337 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.239

4 x ZN: ZINC ION(Non-covalent)

ZN.4: 2 residues within 4Å: Chain A: D.100, D.104 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.100, A:D.100, A:D.104, H2O.1, H2O.5 ZN.5: 2 residues within 4Å: Chain A: D.252, D.256 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.252, H2O.1, H2O.2, H2O.3, H2O.8, H2O.10 ZN.10: 2 residues within 4Å: Chain B: D.100, D.104 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.100, B:D.100, B:D.104, H2O.13, H2O.17 ZN.11: 2 residues within 4Å: Chain B: D.252, D.256 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.252, H2O.13, H2O.13, H2O.15, H2O.20, H2O.21

2 x LXS: 3-ethyl-1-[(1~{R},8~{S},9~{S},10~{S})-10-oxidanyl-11-oxatricyclo[6.2.1.0^{2,7}]undeca-2(7),3,5-trien-9-yl]imidazolidine-2,4-dione(Non-covalent)

LXS.6: 9 residues within 4Å: Chain A: L.157, K.160, V.161, F.212, L.216, M.234, E.238 Chain B: K.27, Y.28 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:L.157, A:K.160, A:V.161, A:F.212, A:L.216, B:Y.28 Water bridges: A:E.238 LXS.12: 9 residues within 4Å: Chain A: K.27, Y.28 Chain B: L.157, K.160, V.161, F.212, L.216, M.234, E.238 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.157, B:K.160, B:V.161, B:F.212, B:L.216, A:Y.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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