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SMTL ID : 5thj.1

Crystal Structure of 2-hydroxycyclohepta-2,4,6-trien-1-one bound to human carbonic anhydrase 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 0TR.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 0TR: 2-HYDROXYCYCLOHEPTA-2,4,6-TRIEN-1-ONE(Non-covalent)

0TR.2:

8 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, L.197, T.198, T.199
Ligands: ZN.1

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197, A:T.199
Water bridges: A:T.198

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.3:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:Q.136, A:C.205

6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:	4 residues within 4Å: Chain A: S.99, L.100, D.101, R.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.101 Salt bridges: A:D.101
DMS.5:	6 residues within 4Å: Chain A: Y.7, P.13, D.242, W.244, P.246 Ligands: DMS.9 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.6:	3 residues within 4Å: Chain A: P.83, D.85, T.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.85 Salt bridges: A:D.85
DMS.7:	4 residues within 4Å: Chain A: K.158, F.175, T.176, F.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.176 pi-Cation interactions: A:F.175
DMS.8:	6 residues within 4Å: Chain A: Y.51, D.52, A.54, N.177, D.179, R.181 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.179
DMS.9:	5 residues within 4Å: Chain A: Y.7, G.8, V.241, D.242 Ligands: DMS.5 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.10:

5 residues within 4Å:

Chain A: L.60, N.61, N.62, K.169, G.170

No protein-ligand interaction detected (PLIP)

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.11:

2 residues within 4Å:

Chain A: K.111, K.113

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.111, A:K.113
Salt bridges: A:K.113, A:K.113

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dick, B.L. et al., Effect of donor atom identity on metal-binding pharmacophore coordination. J. Biol. Inorg. Chem. (2017)

Release Date

2017-04-26

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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