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SMTL ID : 5u0d.1

Identification of a New Zinc Binding Chemotype by Fragment Screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: 7R7.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 7R7: (5R)-5-(2,4-dimethoxyphenyl)-2-sulfanylidene-1,3-oxazolidin-4-one(Non-covalent)

7R7.2:

11 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199, W.208
Ligands: ZN.1

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:T.198, A:T.199, A:T.199
Water bridges: A:Q.92, A:Q.92, A:Q.92

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

2 residues within 4Å:

Chain A: H.17, K.24

1 PLIP interactions:

1 interactions with chain A

Water bridges: A:H.17

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chrysanthopoulos, P.K. et al., Identification of a New Zinc Binding Chemotype by Fragment Screening. J. Med. Chem. (2017)

Release Date

2017-08-30

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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