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SMTL ID : 5u0e.1

Identification of a New Zinc Binding Chemotype by Fragment Screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 7R4.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x 7R4: (5R)-5-benzyl-2-sulfanylidene-1,3-thiazolidin-4-one(Non-covalent)

7R4.2:

9 residues within 4Å:

Chain A: H.94, H.96, H.119, F.130, L.197, T.198, T.199, W.208
Ligands: ZN.1

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:F.130
Hydrogen bonds: A:T.198

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

4 residues within 4Å:

Chain A: K.112, Y.114, K.148, P.214

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:K.112, A:K.112, A:Y.114, A:K.148
Water bridges: A:K.212

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:Y.7

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chrysanthopoulos, P.K. et al., Identification of a New Zinc Binding Chemotype by Fragment Screening. J. Med. Chem. (2017)

Release Date

2017-08-30

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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1ca3.1 | 1cnw.1 | 1cnx.1 | 1cny.1 | 1eou.1 | 1g6v.1 | 1hca.1 | 1kwq.1 | 1kwr.1 | 1t9n.1 | 1tb0.1 | 1tbt.1 | 1te3.1 | 1teq.1 | 1teu.1 | 1xeg.1 | 1xev.1 | 1xev.2 | 1xev.3 | 1xev.4 | 2ax2.1 | 2eu2.1 | 2eu3.1 | 2ez7.1 | 2fmg.1 | 2fmz.1 | 2foq.1 | 2fos.1 | 2fou.1 | 2fov.1 more...less...

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