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SMTL ID : 5vgy.1

Identification of a New Zinc Binding Chemotype by Fragment Screening

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: 9AA.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x NA: SODIUM ION(Non-functional Binders)

NA.2:	7 residues within 4Å: Chain A: L.44, K.45, P.46, L.47, G.82, Y.190, S.258 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.47, A:Y.190, A:Y.190
NA.3:	1 residues within 4Å: Chain A: R.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.27

1 x 9AA: (5S)-5-[(2,4-dimethoxyphenyl)methyl]-5-hydroxy-2-sulfanylideneimidazolidin-4-one(Non-covalent)

9AA.4:

13 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, P.201, W.208
Ligands: ZN.1

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:F.130
Hydrogen bonds: A:T.198, A:T.198, A:T.199, A:T.199
Water bridges: A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Chrysanthopoulos, P.K. et al., Identification of a New Zinc Binding Chemotype by Fragment Screening. J. Med. Chem. (2017)

Release Date

2017-08-30

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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1ca3.1 | 1cnw.1 | 1cnx.1 | 1cny.1 | 1eou.1 | 1g6v.1 | 1hca.1 | 1kwq.1 | 1kwr.1 | 1t9n.1 | 1tb0.1 | 1tbt.1 | 1te3.1 | 1teq.1 | 1teu.1 | 1xeg.1 | 1xev.1 | 1xev.2 | 1xev.3 | 1xev.4 | 2ax2.1 | 2eu2.1 | 2eu3.1 | 2ez7.1 | 2fmg.1 | 2fmz.1 | 2foq.1 | 2fos.1 | 2fou.1 | 2fov.1 more...less...

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