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SMTL ID : 5yui.1

CO2 release in human carbonic anhydrase II crystals: reveal histidine 64 and solvent dynamics

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: CO2.2

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.3

2 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.2:	8 residues within 4Å: Chain A: H.94, H.119, V.121, V.142, L.197, T.198, W.208 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.198 Water bridges: A:Q.92, A:T.199
CO2.3:	6 residues within 4Å: Chain A: F.95, W.97, A.116, L.147, V.222, F.225 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:D.242

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kim, C.U. et al., Tracking solvent and protein movement during CO2 release in carbonic anhydrase II crystals. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2018-08-01

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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