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SMTL ID : 6ceb.1

Insulin Receptor ectodomain in complex with two insulin molecules - C1 symmetry

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1:	3 residues within 4Å: Chain A: H.21, E.22, N.25 No protein-ligand interaction detected (PLIP)
NAG-NAG-FUC.3:	3 residues within 4Å: Chain A: D.234, R.252, N.255 No protein-ligand interaction detected (PLIP)
NAG-NAG-FUC.6:	3 residues within 4Å: Chain B: H.21, E.22, N.25 No protein-ligand interaction detected (PLIP)
NAG-NAG-FUC.8:	4 residues within 4Å: Chain B: D.234, R.252, N.255, S.257 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2:	8 residues within 4Å: Chain A: N.111, S.134, R.135, I.136, L.137, D.138, L.213, R.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.138
NAG-NAG-BMA.7:	9 residues within 4Å: Chain B: N.111, T.113, S.134, R.135, I.136, L.137, D.138, L.213, R.229 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4:	2 residues within 4Å: Chain A: N.397 Chain B: E.453 No protein-ligand interaction detected (PLIP)
NAG-NAG.9:	2 residues within 4Å: Chain A: E.453 Chain B: N.397 No protein-ligand interaction detected (PLIP)

2 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.5:	3 residues within 4Å: Chain A: S.415, K.416, N.418 No protein-ligand interaction detected (PLIP)
NAG-FUC.10:	3 residues within 4Å: Chain B: S.415, K.416, N.418 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.11:	3 residues within 4Å: Chain A: N.16, T.18 Chain G: R.22 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain A Hydrogen bonds: G:R.22, A:N.16, A:T.18
NAG.12:	3 residues within 4Å: Chain A: N.108, K.190, N.215 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.190 Hydrogen bonds: A:N.215, A:N.215
NAG.13:	4 residues within 4Å: Chain B: N.15, N.16, T.18 Chain E: R.22 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:R.22, B:N.16
NAG.14:	3 residues within 4Å: Chain B: N.108, K.190, N.215 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.190 Hydrogen bonds: B:N.215, B:N.215

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Scapin, G. et al., Structure of the insulin receptor-insulin complex by single-particle cryo-EM analysis. Nature (2018)

Release Date

2018-03-14

Peptides

Insulin receptor: AB
Insulin receptor: CH
Insulin A chain: DF
Insulin B chain: EG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
M

H
P

D
K

F
N

E
L

G
O

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Insulin receptor

Insulin receptor

Toggle Identical (CH)

Insulin A chain

Toggle Identical (DF)

Insulin B chain

Toggle Identical (EG)

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1b2f.2 | 1b2g.1 | 1b9e.1 | 1b9e.2 | 1ben.1 | 1ben.2 | 1ben.3 | 1ben.4 | 1ben.5 | 1ben.6 | 1ben.7 | 1ben.8 | 1ben.9 | 1ben.10 | 1ben.11 | 1ben.12 | 1bph.1 | 1bph.2 | 1bph.3 | 1bph.4 | 1bzv.1 | 1cph.1 | 1cph.2 | 1cph.3 | 1cph.4 | 1cph.5 | 1dei.1 | 1dei.2 | 1dei.3 | 1dph.1 | 1dph.2 | 1dph.3 | 1dph.4 | 1ev3.1 | 1ev6.1 | 1evr.1 | 1fu2.1 | 1fu2.2 | 1fu2.3 | 1fu2.4 | 1fub.1 | 1fub.2 | 1g7a.1 | 1g7a.2 | 1g7b.1 | 1g7b.2 | 1guj.1 | 1guj.2 | 1hiq.1 | 1his.1 | 1hit.1 | 1hls.1 | 1htv.1 | 1hui.1 | 1iza.1 | 1iza.2 | 1iza.3 | 1iza.4 | 1izb.1 | 1izb.2 | 1izb.3 | 1izb.4 | 1izb.5 | 1izb.6 | 1izb.7 | 1izb.8 | 1jco.1 | 1kmf.1 | 1lph.1 | 1lph.2 | 1lph.3 | 1lph.4 | 1lph.5 | 1lph.6 | 1lph.7 | 1lph.8 | 1lph.9 | 1m5a.1 | 1mhi.1 | 1mhj.1 | 1mpj.1 | 1mpj.2 | 1mpj.3 | 1mpj.4 | 1mpj.5 | 1mpj.6 | 1mpj.7 | 1mso.1 | 1os3.1 | 1os4.1 | 1q4v.1 | 1q4v.2 | 1q4v.3 | 1qiy.1 | 1qiz.1 | 1qj0.1 | 1sdb.1 | 1sf1.1 | 1sjt.1 | 1t1k.1 | 1t1p.1 | 1t1q.1 | 1trz.1 | 1trz.2 | 1trz.3 | 1trz.4 | 1trz.5 | 1trz.6 | 1trz.7 | 1trz.8 | 1trz.9 | 1tyl.1 | 1tyl.2 | 1tyl.3 | 1tyl.4 | 1tyl.5 | 1tyl.6 | 1tyl.7 | 1tyl.8 | 1tym.1 | 1tym.2 | 1tym.3 | 1tym.4 | 1tym.5 | 1tym.6 | 1tym.7 | 1uz9.1 | 1w8p.1 | 1wav.1 | 1wav.2 | 1wav.3 | 1wav.4 | 1wav.5 | 1wav.6 | 1wav.7 | 1wav.8 | 1wav.9 | 1wav.10 | 1wav.11 | 1wav.12 | 1xda.1 | 1xda.2 | 1xda.3 | 1xda.4 | 1xda.5 | 1xda.6 | 1xda.7 | 1xda.8 | 1xda.9 | 1xda.10 | 1xda.11 | 1xda.12 | 1xgl.1 | 1zeg.1 | 1zeg.2 | 1zeg.3 | 1zeg.4 | 1zeg.5 | 1zeg.6 | 1zeg.7 | 1zeg.8 | 1zeg.9 | 1zeh.1 | 1zeh.2 | 1zeh.3 | 1zeh.4 | 1zeh.5 | 1zeh.6 | 1zeh.7 | 1zni.1 | 1zni.2 | 1zni.3 | 1zni.4 | 1zni.5 | 1zni.6 | 1zni.7 | 1zni.8 | 1znj.1 | 2a3g.1 | 2aiy.1 | 2bn1.1 | 2bn3.1 | 2c8q.1 | 2c8r.1 | 2ceu.1 | 2efa.1 | 2efa.2 | 2g4m.1 | 2g4m.2 | 2h67.1 | 2hh4.1 | 2hho.1 | 2hiu.1 | 2jmn.1 | 2jv1.1 | 2k91.1 | 2k9r.1 | 2kjj.1 | 2kju.1 | 2kqq.1 | 2l1y.1 | 2m1d.1 | 2m1e.1 | 2m2m.1 | 2m2n.1 | 2m2o.1 | 2m2p.1 | 2mli.1 | 2mpg.1 | 2mpi.1 | 2mvc.1 | 2mvd.1 | 2n2v.1 | 2n2w.1 | 2n2x.1 | 2oly.1 | 2olz.1 | 2om0.1 | 2om0.2 | 2om0.3 | 2om1.1 | 2om1.2 | 2om1.3 | 2omg.1 | 2omh.1 | 2omh.2 | 2omi.1 | 2rn5.1 | 2tci.1 | 2tci.2 | 2vjz.1 | 2vk0.1 | 2wc0.1 | 2wc0.2 | 2wru.1 | 2wrv.1 | 2wrw.1 | 2wrx.1 | 2ws0.1 | 2ws1.1 | 2ws4.1 | 2ws6.1 | 2ws6.2 | 2ws6.3 | 2ws6.4 | 2ws6.5 | 2ws6.6 | 2ws7.1 | 2zp6.1 | 2zp6.2 | 2zp6.3 | 2zpp.1 | 3aiy.1 | 3bxq.1 | 3e7y.1 | 3e7y.2 | 3e7y.3 | 3e7y.4 | 3e7y.5 | 3e7y.6 | 3e7y.7 | 3e7y.8 | 3e7z.1 | 3e7z.2 | 3e7z.3 | 3e7z.4 | 3e7z.5 | 3e7z.6 | 3e7z.7 | 3e7z.8 | 3exx.1 | 3exx.2 | 3fhp.1 | 3gky.1 | 3i3z.1 | 3i40.1 | 3ilg.1 | 3inc.1 | 3ins.1 | 3ins.2 | 3ins.3 | 3ins.4 | 3ir0.1 | 3ir0.2 | 3ir0.3 | 3ir0.4 | 3ir0.5 | 3ir0.6 | 3jsd.1 | 3mth.1 | 3mth.2 | 3mth.3 | 3mth.4 | 3mth.5 | 3mth.6 | 3mth.7 | 3p2x.1 | 3p2x.2 | 3p33.1 | 3p33.2 | 3p33.3 | 3p33.4 | 3q6e.1 | 3q6e.2 | 3rov.1 | 3rov.2 | 3rov.3 | 3rov.4 | 3rto.1 | 3t2a.1 | 3t2a.2 | 3tt8.1 | 3tt8.2 | 3tt8.3 | 3tt8.4 | 3u4n.1 | 3u4n.2 | 3v1g.1 | 3w11.1 | 3w12.1 | 3w13.1 | 3w7y.1 | 3w7y.2 | 3w7z.1 | 3w7z.2 | 3w80.1 | 3w80.2 | 3zi3.1 | 3zqr.1 | 3zs2.1 | 3zu1.1 | 4a7e.1 | 4aiy.1 | 4ajx.1 | 4ajz.1 | 4ajz.2 | 4ak0.1 | 4akj.1 | 4akj.2 | 4bs3.1 | 4cxl.1 | 4cxl.2 | 4cxn.1 | 4cxn.2 | 4cy7.1 | 4cy7.2 | 4e7t.1 | 4e7t.2 | 4e7u.1 | 4e7u.2 | 4e7v.1 | 4e7v.2 | 4e7v.3 | 4e7v.4 | 4e7v.5 | 4e7v.6 | 4e7v.7 | 4e7v.8 | 4e7v.9 | 4e7v.10 | 4e7v.11 | 4e7v.12 | 4e7v.13 | 4e7v.14 | 4e7v.15 | 4e7v.16 | 4e7v.17 | 4e7v.18 | 4e7v.19 | 4e7v.20 | 4eww.1 | 4ewx.1 | 4ewz.1 | 4ex0.1 | 4ex1.1 | 4exx.1 | 4ey1.1 | 4ey9.1 | 4eyd.1 | 4eyn.1 | 4eyp.1 | 4f0n.1 | 4f0o.1 | 4f1a.1 | 4f1b.1 | 4f1c.1 | 4f1d.1 | 4f1f.1 | 4f1g.1 | 4f4t.1 | 4f4v.1 | 4f51.1 | 4f8f.1 | 4fg3.1 | 4fka.1 | 4fka.2 | 4fka.3 | 4gbc.1 | 4gbi.1 | 4gbk.1 | 4gbl.1 | 4gbn.1 | 4i5y.1 | 4i5z.1 | 4idw.1 | 4idw.2 | 4ihn.1 | 4ins.1 | 4ins.2 | 4ins.3 | 4ins.4 | 4ins.5 | 4ins.6 | 4ins.7 | 4iuz.1 | 4m4f.1 | 4m4f.2 | 4m4h.1 | 4m4h.2 | 4m4i.1 | 4m4i.2 | 4m4j.1 | 4m4j.2 | 4m4l.1 | 4m4l.2 | 4m4m.1 | 4m4m.2 | 4nib.1 | 4oga.1 | 4p65.1 | 4rxw.1 | 4rxw.2 | 4rxw.3 | 4une.1 | 4une.2 | 4une.3 | 4ung.1 | 4ung.2 | 4unh.1 | 4xc4.1 | 5aiy.1 | 5boq.1 | 5boq.2 | 5bpo.1 | 5bqq.1 | 5bts.1 | 5cny.1 | 5co2.1 | 5co6.1 | 5co9.1 | 5d52.1 | 5d53.1 | 5d54.1 | 5d5e.1 | 5e7w.1 | 5ems.1 | 5en9.1 | 5en9.2 | 5ena.1 | 5ena.2 | 5fb6.1 | 5hpr.1 | 5hpr.2 | 5hpu.1 | 5hqi.1 | 5hrq.1 | 5kqv.1 | 5lis.1 | 5mam.1 | 5mam.2 | 5mam.3 | 5mam.4 | 5miz.1 | 5mt3.1 | 5mt3.2 | 5mt3.3 | 5mt3.4 | 5mt9.1 | 5mt9.2 | 5mt9.3 | 5mt9.4 | 5udp.1 | 5udp.2 | 5uoz.1 | 5uqa.1 | 5urt.1 | 5urt.2 | 5uru.1 | 5uru.2 | 5usp.1 | 5usp.2 | 5uss.1 | 5usv.1 | 5usv.2 | 5uu2.1 | 5uu2.2 | 5uu3.1 | 5uu3.2 | 5uu4.1 | 6ce7.1 | 6ce9.1 | 6ck2.1 | 6gnq.1 | 6gnq.2 | 6gv0.1 | 6hn5.1 | 6kh8.1 | 6kh9.1 | 6kha.1 | 6nwv.1 | 6o17.1 | 6p4z.1 | 6q8q.1 | 6qq7.1 | 6qqg.1 | 6qrh.1 | 6qrk.1 | 6s34.1 | 6sof.1 | 6vep.1 | 6vep.2 | 6vep.3 | 6vep.4 | 6ver.1 | 6x4x.1 | 6z7w.1 | 6z7w.2 | 6z7w.3 | 6z7w.4 | 6z7w.5 | 6z7w.6 | 6z7y.1 | 6z7y.2 | 6z7z.1 | 6z7z.2 | 6zhb.1 | 7ac4.1 | 7elj.1 | 7ins.1 | 7ins.2 | 7ins.3 | 7ins.4 | 7ins.5 | 7ins.6 | 7ins.7 | 7ins.8 | 7ins.9 | 7ins.10 | 7ins.11 | 7ins.12 | 7md4.1 | 7md5.1 | 7nhu.1 | 7pg0.1 | 7pg2.1 | 7pg3.1 | 7pg4.1 | 7qac.1 | 7qgf.1 | 7qid.1 | 7rkd.1 | 7rze.1 | 7rzf.1 | 7rzi.1 | 7s4y.1 | 7s4y.2 | 7sl4.1 | 7sl6.1 | 7u6e.1 | 7v3p.1 | 7yq3.1 | 7yq4.1 | 7yq5.1 | 7z5l.1 | 7z5q.1 | 8gsg.1 | 8guy.1 | 8hgz.1 | 8hgz.2 | 8hsf.1 | 8hsf.2 | 8hsk.1 | 8ipz.1 | 8ipz.2 | 8oky.1 | 8oni.1 | 8oni.2 | 8onk.1 | 8onk.2 | 8onp.1 | 8onr.1 | 8rvt.1 | 8sbd.1 | 8z4b.1 | 9ins.1 | 9ins.2

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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