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SMTL ID : 6d1l.1

Design, synthesis, and X-ray of selenides bearing benzenesulfonamide moiety with neuropathic pain modulating effects

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: FQV.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: FQV.3

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:T.199

2 x FQV: 4-[(but-2-yn-1-yl)selanyl]benzene-1-sulfonamide(Non-covalent)

FQV.3:	15 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, V.134, V.142, L.197, T.198, T.199, P.201, L.203, W.208 Ligands: ZN.1, GOL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.121, A:V.134, A:L.197, A:L.197, A:P.201, A:L.203 Hydrogen bonds: A:T.198, A:T.198
FQV.4:	8 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, D.19, F.20 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:H.4, A:N.11, A:N.11 Hydrogen bonds: A:D.19, A:D.19, A:D.19 Water bridges: A:W.5

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Angeli, A. et al., Design, synthesis and X-ray crystallography of selenides bearing benzenesulfonamide moiety with neuropathic pain modulating effects. Eur J Med Chem (2018)

Release Date

2018-06-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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