SMTL ID : 6ei1.1

Crystal structure of the covalent complex between deubiquitinase ZUFSP (ZUP1) and Ubiquitin-PA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AYE: prop-2-en-1-amine(Covalent)

AYE.1: 9 residues within 4Å: Chain A: G.126, W.127, G.128, C.129, G.130, W.192, G.259, H.260 Chain B: G.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.259

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Y.199, H.210, I.211, A.337, S.338, F.341, T.342, A.343 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.211, A:A.337 Water bridges: A:T.342, A:T.342, A:T.342

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.3: 6 residues within 4Å: Chain A: Q.258, H.314, K.315, Q.316 Chain B: R.42, Q.49 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.49, A:K.315 Salt bridges: B:R.42, A:H.314 Water bridges: A:Q.258, A:H.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hermanns, T. et al., A family of unconventional deubiquitinases with modular chain specificity determinants. Nat Commun (2018)

Release Date

2018-03-07

Peptides

Zinc finger with UFM1-specific peptidase domain protein: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zinc finger with UFM1-specific peptidase domain protein

Polyubiquitin-B

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