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SMTL ID : 6g6t.1

Crystal structure of human carbonic anhydrase isozyme II with N-butyl-2,4-dichloro-5-sulfamoyl-benzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: ENN.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x BCN: BICINE(Non-covalent)

BCN.3:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.148, A:K.148
Water bridges: A:Y.114, A:K.212

1 x ENN: ~{N}-butyl-2,4-bis(chloranyl)-5-sulfamoyl-benzamide(Non-covalent)

ENN.4:

16 residues within 4Å:

Chain A: W.5, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.140, V.142, L.197, T.198, T.199, P.200, W.208
Ligands: ZN.1

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:W.5
Hydrogen bonds: A:N.67, A:Q.92, A:T.198, A:T.198, A:T.199, A:T.199
Water bridges: A:N.62, A:N.62

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zaksauskas, A. et al., Design of two-tail compounds with rotationally fixed benzenesulfonamide ring as inhibitors of carbonic anhydrases. Eur J Med Chem (2018)

Release Date

2019-03-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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