SMTL ID : 6r04.1

T. cruzi FPPS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.252, D.256 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.252, H2O.1, H2O.4, H2O.5 ZN.2: 2 residues within 4Å: Chain A: D.104, Q.169 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.104, H2O.1, H2O.5 ZN.6: 2 residues within 4Å: Chain B: D.252, D.256 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.252, H2O.12, H2O.15, H2O.16 ZN.7: 2 residues within 4Å: Chain B: D.104, Q.169 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.104, H2O.12, H2O.16

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52, A:Q.93 Water bridges: A:R.53, A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93, A:Q.93, A:R.110 Salt bridges: A:R.53 SO4.4: 3 residues within 4Å: Chain A: F.19, Q.23, H.143 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.23 Water bridges: A:H.143 Salt bridges: A:H.143 SO4.8: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52, B:Q.93 Water bridges: B:R.53, B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93, B:Q.93, B:R.110 Salt bridges: B:R.53 SO4.9: 3 residues within 4Å: Chain B: F.19, Q.23, H.143 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.23 Water bridges: B:H.143, B:H.143, B:H.143 Salt bridges: B:H.143

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 4 residues within 4Å: Chain A: R.239, E.333, S.336, L.337 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.333 Hydrogen bonds: A:S.336 Salt bridges: A:R.239 ACT.10: 4 residues within 4Å: Chain B: R.239, E.333, S.336, L.337 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.333 Hydrogen bonds: B:S.336 Salt bridges: B:R.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)

Release Date

2020-04-01

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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