- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x JMN: (3~{S},4~{S})-4-(3,4-dimethylphenoxy)-1-prop-2-ynyl-piperidin-3-ol(Covalent)(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.3: 3 residues within 4Å:- Chain A: D.100, D.104, Q.169
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.100, A:D.104, H2O.1, H2O.1, H2O.2
ZN.4: 3 residues within 4Å:- Chain A: D.252, D.256
- Ligands: SO4.6
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.252, H2O.1, H2O.2
ZN.10: 3 residues within 4Å:- Chain B: D.100, D.104, Q.169
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.100, B:D.104, H2O.10, H2O.10, H2O.12
ZN.11: 3 residues within 4Å:- Chain B: D.252, D.256
- Ligands: SO4.13
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.252, H2O.10, H2O.12
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 6 residues within 4Å:- Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:K.50, A:Y.51, A:F.52
- Water bridges: A:R.53, A:R.53, A:R.53, A:E.90, A:Q.93, A:R.110
- Salt bridges: A:R.53
SO4.6: 7 residues within 4Å:- Chain A: D.172, K.209, Q.249, D.252, K.275
- Ligands: JMN.1, ZN.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.172, A:Q.249
- Water bridges: A:K.275, A:K.275
- Salt bridges: A:K.209, A:K.275
SO4.12: 6 residues within 4Å:- Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:K.50, B:Y.51, B:F.52
- Water bridges: B:R.53, B:R.53, B:R.53, B:E.90, B:Q.93, B:R.110
- Salt bridges: B:R.53
SO4.13: 7 residues within 4Å:- Chain B: D.172, K.209, Q.249, D.252, K.275
- Ligands: JMN.8, ZN.11
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.172, B:Q.249
- Water bridges: B:D.172, B:D.253, B:K.275, B:K.275
- Salt bridges: B:K.209, B:K.275
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 2 residues within 4Å:- Chain A: Q.23, H.143
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.23
- Salt bridges: A:K.27, A:H.143
ACT.14: 2 residues within 4Å:- Chain B: Q.23, H.143
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.23
- Water bridges: B:H.143
- Salt bridges: B:K.27, B:H.143
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)
- Release Date
- 2020-04-01
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.56 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x JMN: (3~{S},4~{S})-4-(3,4-dimethylphenoxy)-1-prop-2-ynyl-piperidin-3-ol(Covalent)(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)
- Release Date
- 2020-04-01
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A