SMTL ID : 6shv.1

T. cruzi FPPS in complex with 5-(4-fluorophenoxy)pyridin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

4 x LDW: 5-(4-fluoranylphenoxy)pyridin-2-amine(Non-covalent)

LDW.1: 12 residues within 4Å: Chain A: Y.96, L.97, E.99, D.100, M.103, T.165, A.166, Q.169, K.209, Y.213 Chain B: N.128, I.131 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.96, A:Y.96, A:D.100, A:Q.169 Hydrogen bonds: A:Y.213 Water bridges: A:Q.93, A:R.109, A:Y.213 LDW.2: 7 residues within 4Å: Chain A: L.21, D.22, Q.25, I.30, D.31, P.32, A.35 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.21, A:Q.25, A:I.30, A:P.32, A:A.35 Hydrogen bonds: A:D.22 LDW.5: 12 residues within 4Å: Chain A: N.128, I.131 Chain B: Y.96, L.97, E.99, D.100, M.103, T.165, A.166, Q.169, K.209, Y.213 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.96, B:Y.96, B:D.100, B:Q.169 Hydrogen bonds: B:Y.213, B:Y.213 Water bridges: B:Q.93, B:R.109 LDW.6: 7 residues within 4Å: Chain B: L.21, D.22, Q.25, I.30, D.31, P.32, A.35 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.21, B:Q.25, B:I.30, B:P.32, B:A.35 Hydrogen bonds: B:D.22, B:D.22

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: D.100, D.104, Q.169 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.100, A:D.100, A:D.104, A:D.104, H2O.1 ZN.7: 3 residues within 4Å: Chain B: D.100, D.104, Q.169 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.100, B:D.100, B:D.104, B:D.104, H2O.9

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52 Water bridges: A:R.53, A:R.53, A:E.90, A:Q.93, A:Q.93, A:Q.93, A:Q.93 Salt bridges: A:R.53 SO4.8: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52 Water bridges: B:R.53, B:R.53, B:E.90, B:Q.93, B:Q.93, B:Q.93, B:Q.93 Salt bridges: B:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., Targeting farnesyl pyrophosphate synthase of Trypanosoma cruzi by fragment-based lead discovery. Thesis (2019)

Release Date

2020-08-26

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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