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SMTL ID : 6t5c.1

Human Carbonic anhydrase II bound by anthracene-9-sulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: MJT.6

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x BCN: BICINE(Non-covalent)

BCN.2:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.148, A:K.148
Water bridges: A:Y.114
Salt bridges: A:K.212

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4:	3 residues within 4Å: Chain A: H.17, K.18, P.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.17
PEG.5:	3 residues within 4Å: Chain A: L.60, N.62, G.170 No protein-ligand interaction detected (PLIP)

1 x MJT: anthracene-9-sulfonamide(Non-covalent)

MJT.6:

13 residues within 4Å:

Chain A: N.62, A.65, N.67, Q.92, H.94, H.96, H.119, V.121, F.130, L.197, T.198, T.199
Ligands: ZN.1

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:A.65, A:V.121, A:V.121, A:F.130, A:L.197, A:T.199
Hydrogen bonds: A:T.198, A:T.198, A:T.199
pi-Stacking: A:H.94, A:H.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dudutiene, V. et al., Isoform-Selective Enzyme Inhibitors by Exploring Pocket Size According to the Lock-and-Key Principle. Biophys.J. (2020)

Release Date

2020-10-14

Peptides

carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

carbonic anhydrase 2

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