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SMTL ID : 6t81.1

Human Carbonic anhydrase II bound by 2-Naphthalenesulfonamide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.98 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: MUE.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x MUE: naphthalene-2-sulfonamide(Non-covalent)

MUE.2:

12 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.121, A:F.130, A:L.197, A:L.197
Hydrogen bonds: A:T.198, A:T.198

1 x BCN: BICINE(Non-covalent)

BCN.3:

4 residues within 4Å:

Chain A: K.148, K.212, E.213, P.214

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:K.148, A:K.212
Water bridges: A:Y.114, A:Y.114

1 x AZI: AZIDE ION(Non-covalent)

AZI.4:

5 residues within 4Å:

Chain A: L.188, D.189, Y.190, S.258, F.259

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:S.258, A:S.258

1 x NA: SODIUM ION(Non-functional Binders)

NA.5:

2 residues within 4Å:

Chain A: S.219, E.220

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:E.220
Water bridges: A:S.219

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Dudutiene, V. et al., Isoform-Selective Enzyme Inhibitors by Exploring Pocket Size According to the Lock-and-Key Principle. Biophys.J. (2020)

Release Date

2020-10-14

Peptides

carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

carbonic anhydrase 2

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