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SMTL ID : 6yqt.1

CRYSTAL STRUCTURE OF HUMAN CA II IN COMPLEX WITH A SULFONAMIDE DERIVATIVE OF 2-MERCAPTOBENZOXAZOLE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: P9E.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x P9E: 2-sulfanylidene-3~{H}-1,3-benzoxazole-5-sulfonamide(Non-covalent)

P9E.2:	13 residues within 4Å: Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, V.142, S.196, L.197, T.198, T.199, W.208 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.121, A:V.121, A:L.197, A:L.197 Hydrogen bonds: A:T.198, A:T.198, A:T.199
P9E.3:	7 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, D.19 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.4, A:N.11, A:H.15 Hydrogen bonds: A:D.19, A:D.19 Water bridges: A:H.4

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

5 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, P.246

2 PLIP interactions:

2 interactions with chain A

pi-Cation interactions: A:W.244, A:W.244

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Bozdag, M. et al., 2-Mercaptobenzoxazoles: a class of carbonic anhydrase inhibitors with a novel binding mode to the enzyme active site. Chem.Commun.(Camb.) (2020)

Release Date

2020-07-01

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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