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SMTL ID : 6yqu.1

CRYSTAL STRUCTURE OF HUMAN CA II IN COMPLEX WITH 2-MERCAPTOBENZOXAZOLE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: P92.2

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Metal complexes: A:H.94, A:H.96, A:H.119, H₂O.1

1 x P92: 3~{H}-1,3-benzoxazole-2-thione(Non-covalent)

P92.2:

11 residues within 4Å:

Chain A: Q.92, H.94, H.119, V.121, F.130, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.3

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:F.130, A:L.197

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: P92.2

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:T.199

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:	3 residues within 4Å: Chain A: Y.7, D.242, W.244 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:D.242 pi-Cation interactions: A:W.244, A:W.244
DMS.5:	2 residues within 4Å: Chain A: E.233, G.234 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Bozdag, M. et al., 2-Mercaptobenzoxazoles: a class of carbonic anhydrase inhibitors with a novel binding mode to the enzyme active site. Chem.Commun.(Camb.) (2020)

Release Date

2020-07-01

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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