SMTL ID : 7afd.1

Bacterial 30S ribosomal subunit assembly complex state A (head domain)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

22 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: C.980 Chain H: S.58, Q.60 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: C.979, C.980 No protein-ligand interaction detected (PLIP) MG.3: 3 residues within 4Å: Chain A: C.1352, G.1370, G.1371 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: A.1110, A.1111, U.1189 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: A.1176, G.1177, G.1182 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: G.944, G.945 No protein-ligand interaction detected (PLIP) MG.7: 3 residues within 4Å: Chain A: A.937, A.938, G.939 No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain A: G.1061 Chain C: V.5 No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain A: U.1224 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain A: G.971, C.972 No protein-ligand interaction detected (PLIP) MG.11: 2 residues within 4Å: Chain A: G.953, G.963 No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Chain A: C.1200 No protein-ligand interaction detected (PLIP) MG.13: 4 residues within 4Å: Chain A: C.1054, A.1196, A.1197, G.1198 No protein-ligand interaction detected (PLIP) MG.14: 3 residues within 4Å: Chain A: A.964, G.1198, U.1199 No protein-ligand interaction detected (PLIP) MG.15: 4 residues within 4Å: Chain A: G.1053, C.1054, A.1197, G.1198 No protein-ligand interaction detected (PLIP) MG.16: 2 residues within 4Å: Chain A: G.1087, G.1088 No protein-ligand interaction detected (PLIP) MG.17: 3 residues within 4Å: Chain A: C.1303, G.1304, G.1305 No protein-ligand interaction detected (PLIP) MG.18: 2 residues within 4Å: Chain A: C.1328, A.1329 No protein-ligand interaction detected (PLIP) MG.19: 1 residues within 4Å: Chain A: A.1254 No protein-ligand interaction detected (PLIP) MG.20: 5 residues within 4Å: Chain A: U.1085, U.1086, G.1099, C.1100, C.1103 No protein-ligand interaction detected (PLIP) MG.21: 4 residues within 4Å: Chain A: A.1157, C.1158, U.1183, G.1184 No protein-ligand interaction detected (PLIP) MG.23: 3 residues within 4Å: Chain A: A.1204 Chain H: A.2, Q.4 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.22: 6 residues within 4Å: Chain B: H.18, D.165, D.188, N.190, D.204, D.205 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.18, B:D.188, B:D.204, B:D.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schedlbauer, A. et al., A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv (2021)

Release Date

2021-07-07

Peptides

30S ribosomal protein S2: B
30S ribosomal protein S3: C
30S ribosomal protein S7: D
30S ribosomal protein S9: E
30S ribosomal protein S10: F
30S ribosomal protein S13: G
30S ribosomal protein S14: H
30S ribosomal protein S19: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

C
C

D
G

E
I

F
J

G
M

H
N

I
S

30S ribosomal protein S2

30S ribosomal protein S3

30S ribosomal protein S7

30S ribosomal protein S9

30S ribosomal protein S10

30S ribosomal protein S13

30S ribosomal protein S14

30S ribosomal protein S19

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