SMTL ID : 9mkk.1

Structure of arbekacin bound Escherichia coli 70S ribosome

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x 84G: Arbekacin(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Majumdar, S. et al., Structure-function comparison of Arbekacin with other aminoglycosides elucidates its higher potency as bacterial translation inhibitor. Sci Rep (2025)
Release Date
2025-07-30
Peptides
50S ribosomal protein L33: A
50S ribosomal protein L34: B
50S ribosomal protein L35: C
50S ribosomal protein L36: D
50S ribosomal protein L31: E
30S ribosomal protein S2: F
Small ribosomal subunit protein uS3: G
Small ribosomal subunit protein uS4: H
Small ribosomal subunit protein uS5: I
Small ribosomal subunit protein bS6: J
Small ribosomal subunit protein uS7: K
Small ribosomal subunit protein uS8: L
Small ribosomal subunit protein uS9: M
Small ribosomal subunit protein uS10: N
30S ribosomal protein S11: O
30S ribosomal protein S12: P
Small ribosomal subunit protein uS13: Q
Small ribosomal subunit protein uS14: R
Small ribosomal subunit protein uS15: S
Small ribosomal subunit protein bS16: T
Small ribosomal subunit protein uS17: U
Small ribosomal subunit protein bS18: V
Small ribosomal subunit protein uS19: W
Small ribosomal subunit protein bS20: X
Small ribosomal subunit protein bS21: Y
50S ribosomal protein L2: 2
50S ribosomal protein L3: 3
Large ribosomal subunit protein uL4: 4
Large ribosomal subunit protein uL5: 5
Large ribosomal subunit protein uL6: 6
Large ribosomal subunit protein uL13: 7
Large ribosomal subunit protein uL14: 8
Large ribosomal subunit protein uL15: 9
50S ribosomal protein L16: a
Large ribosomal subunit protein bL17: b
Large ribosomal subunit protein uL18: c
Large ribosomal subunit protein bL19: d
50S ribosomal protein L20: e
Large ribosomal subunit protein bL21: f
50S ribosomal protein L23: g
50S ribosomal protein L24: h
Large ribosomal subunit protein bL25: i
Large ribosomal subunit protein bL27: j
50S ribosomal protein L28: k
Large ribosomal subunit protein uL29: l
50S ribosomal protein L30: m
50S ribosomal protein L32: n
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
3
E
4
F
B
G
C
H
D
I
E
J
F
K
G
L
H
M
I
N
J
O
K
P
L
Q
M
R
N
S
O
T
P
U
Q
V
R
W
S
X
T
Y
U
2
c
3
d
4
e
5
f
6
g
7
i
8
j
9
k
a
l
b
m
c
n
d
o
e
p
f
q
g
s
h
t
i
u
j
v
k
w
l
x
m
y
n
z

50S ribosomal protein L33

50S ribosomal protein L34

50S ribosomal protein L35

50S ribosomal protein L36

50S ribosomal protein L31

30S ribosomal protein S2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6

Small ribosomal subunit protein uS7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

30S ribosomal protein S11

30S ribosomal protein S12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein bS16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

Small ribosomal subunit protein bS21

50S ribosomal protein L2

50S ribosomal protein L3

Large ribosomal subunit protein uL4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein uL13

Large ribosomal subunit protein uL14

Large ribosomal subunit protein uL15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

50S ribosomal protein L20

Large ribosomal subunit protein bL21

50S ribosomal protein L23

50S ribosomal protein L24

Large ribosomal subunit protein bL25

Large ribosomal subunit protein bL27

50S ribosomal protein L28

Large ribosomal subunit protein uL29

50S ribosomal protein L30

50S ribosomal protein L32

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