SMTL ID : 9wnr.1

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x ZN: ZINC ION(Non-covalent)
1 x PRO: PROLINE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Sriramoju, M.K. et al., Structural basis of enhanced stalling efficiency of an engineered ribosome arrest peptide. Nucleic Acids Res. (2025)
Release Date
2025-10-22
Peptides
Large ribosomal subunit protein bL28: A
Large ribosomal subunit protein uL29: B
Large ribosomal subunit protein uL30: C
Large ribosomal subunit protein bL32: D
Large ribosomal subunit protein bL33: E
50S ribosomal protein L34: F
Large ribosomal subunit protein bL35: G
50S ribosomal protein L36: H
30S ribosomal protein S2: J
30S ribosomal protein S3: K
30S ribosomal protein S4: L
30S ribosomal protein S5: M
30S ribosomal protein S6, fully modified isoform: N
30S ribosomal protein S7: O
30S ribosomal protein S8: P
30S ribosomal protein S9: Q
30S ribosomal protein S10: R
Small ribosomal subunit protein uS11: S
Small ribosomal subunit protein uS12: T
30S ribosomal protein S13: U
30S ribosomal protein S14: V
30S ribosomal protein S15: W
30S ribosomal protein S16: X
30S ribosomal protein S17: Y
30S ribosomal protein S18: Z
30S ribosomal protein S19: 0
30S ribosomal protein S20: 1
30S ribosomal protein S21: 2
Trigger factor: 3
Large ribosomal subunit protein uL2: 9
50S ribosomal protein L3: a
50S ribosomal protein L4: b
Large ribosomal subunit protein uL5: c
Large ribosomal subunit protein uL6: d
50S ribosomal protein L9: e
50S ribosomal protein L13: f
50S ribosomal protein L14: g
50S ribosomal protein L15: h
50S ribosomal protein L16: i
Large ribosomal subunit protein bL17: j
Large ribosomal subunit protein uL18: k
Large ribosomal subunit protein bL19: l
Large ribosomal subunit protein bL20: m
50S ribosomal protein L21: n
50S ribosomal protein L22: o
Large ribosomal subunit protein uL23: p
50S ribosomal protein L24: q
50S ribosomal protein L25: r
Large ribosomal subunit protein bL27: t
eRAP-NC: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
2
D
4
E
5
F
6
G
7
H
8
J
B
K
C
L
D
M
E
N
F
O
G
P
H
Q
I
R
J
S
K
T
L
U
M
V
N
W
O
X
P
Y
Q
Z
R
0
S
1
T
2
U
3
V
9
c
a
d
b
e
c
f
d
g
e
h
f
k
g
l
h
m
i
n
j
o
k
p
l
q
m
r
n
s
o
t
p
u
q
v
r
w
t
y
u
z

Large ribosomal subunit protein bL28

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

50S ribosomal protein L34

Large ribosomal subunit protein bL35

50S ribosomal protein L36

30S ribosomal protein S2

30S ribosomal protein S3

30S ribosomal protein S4

30S ribosomal protein S5

30S ribosomal protein S6, fully modified isoform

30S ribosomal protein S7

30S ribosomal protein S8

30S ribosomal protein S9

30S ribosomal protein S10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

30S ribosomal protein S13

30S ribosomal protein S14

30S ribosomal protein S15

30S ribosomal protein S16

30S ribosomal protein S17

30S ribosomal protein S18

30S ribosomal protein S19

30S ribosomal protein S20

30S ribosomal protein S21

Trigger factor

Large ribosomal subunit protein uL2

50S ribosomal protein L3

50S ribosomal protein L4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

50S ribosomal protein L9

50S ribosomal protein L13

50S ribosomal protein L14

50S ribosomal protein L15

50S ribosomal protein L16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

50S ribosomal protein L21

50S ribosomal protein L22

Large ribosomal subunit protein uL23

50S ribosomal protein L24

50S ribosomal protein L25

Large ribosomal subunit protein bL27

eRAP-NC

Related Entries With Identical Sequence

1b75.1 | 1d6k.1 | 1dfu.1 | 1w26.1 | 1w26.2 | 2j28.1 | 2ykr.1 | 3bbx.1 | 3j45.1 | 3j46.1 | 3j5l.1 | 3j7z.1 | 3j8g.1 | 3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 3w1y.1 | 3w1y.2 | 487d.1 | 4a2i.1 | 4adv.1 | 4csu.1 | 4pe9.1 | 4pea.1  more...