SMTL ID : 9iot.1

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
475 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
1 x CA: CALCIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Minami, A. et al., Molecular basis of RNase I-mediated rRNA degradation regulated by ribosomes. Biorxiv (2025)
Release Date
2025-07-30
Peptides
Large ribosomal subunit protein uL29: A
Large ribosomal subunit protein uL30: B
Large ribosomal subunit protein bL32: C
Large ribosomal subunit protein bL33: D
50S ribosomal protein L34: E
Large ribosomal subunit protein bL35: F
50S ribosomal protein L36: G
Large ribosomal subunit protein uL2: I
50S ribosomal protein L3: J
50S ribosomal protein L4: K
Large ribosomal subunit protein uL5: L
Large ribosomal subunit protein uL6: M
Large ribosomal subunit protein bL9: N
50S ribosomal protein L13: O
50S ribosomal protein L14: P
Large ribosomal subunit protein uL15: Q
Large ribosomal subunit protein uL16: R
Large ribosomal subunit protein bL17: S
Large ribosomal subunit protein uL18: T
Large ribosomal subunit protein bL19: U
Large ribosomal subunit protein bL20: V
50S ribosomal protein L21: W
50S ribosomal protein L22: X
Large ribosomal subunit protein uL23: Y
Large ribosomal subunit protein uL24: Z
50S ribosomal protein L25: 0
Large ribosomal subunit protein bL27: 1
Large ribosomal subunit protein bL28: 2
Large ribosomal subunit protein bL31: 3
Small ribosomal subunit protein uS2: 6
Small ribosomal subunit protein uS3: 7
Small ribosomal subunit protein uS4: 8
Small ribosomal subunit protein uS5: 9
Small ribosomal subunit protein bS6, fully modified isoform: a
Small ribosomal subunit protein uS7: b
Small ribosomal subunit protein uS8: c
Small ribosomal subunit protein uS9: d
Small ribosomal subunit protein uS10: e
Small ribosomal subunit protein uS11: f
Small ribosomal subunit protein uS12: g
Small ribosomal subunit protein uS13: h
Small ribosomal subunit protein uS14: i
Small ribosomal subunit protein uS15: j
Small ribosomal subunit protein bS16: k
Small ribosomal subunit protein uS17: l
Small ribosomal subunit protein bS18: m
Small ribosomal subunit protein uS19: n
Small ribosomal subunit protein bS20: o
30S ribosomal protein S21: p
Ribosome hibernation promoting factor: q
Ribosome modulation factor: r
Ribonuclease I: s
Small ribosomal subunit protein bS1: t
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
0
B
1
C
3
D
4
E
5
F
6
G
7
I
D
J
E
K
F
L
G
M
H
N
I
O
L
P
M
Q
N
R
O
S
P
T
Q
U
R
V
S
W
T
X
U
Y
V
Z
W
0
X
1
Y
2
Z
3
2
6
b
7
c
8
d
9
e
a
f
b
g
c
h
d
i
e
j
f
k
g
l
h
m
i
n
j
o
k
p
l
q
m
r
n
s
o
t
p
u
q
v
r
y
s
z
t
8

Large ribosomal subunit protein uL29

Large ribosomal subunit protein uL30

Large ribosomal subunit protein bL32

Large ribosomal subunit protein bL33

50S ribosomal protein L34

Large ribosomal subunit protein bL35

50S ribosomal protein L36

Large ribosomal subunit protein uL2

50S ribosomal protein L3

50S ribosomal protein L4

Large ribosomal subunit protein uL5

Large ribosomal subunit protein uL6

Large ribosomal subunit protein bL9

50S ribosomal protein L13

50S ribosomal protein L14

Large ribosomal subunit protein uL15

Large ribosomal subunit protein uL16

Large ribosomal subunit protein bL17

Large ribosomal subunit protein uL18

Large ribosomal subunit protein bL19

Large ribosomal subunit protein bL20

50S ribosomal protein L21

50S ribosomal protein L22

Large ribosomal subunit protein uL23

Large ribosomal subunit protein uL24

50S ribosomal protein L25

Large ribosomal subunit protein bL27

Large ribosomal subunit protein bL28

Large ribosomal subunit protein bL31

Small ribosomal subunit protein uS2

Small ribosomal subunit protein uS3

Small ribosomal subunit protein uS4

Small ribosomal subunit protein uS5

Small ribosomal subunit protein bS6, fully modified isoform

Small ribosomal subunit protein uS7

Small ribosomal subunit protein uS8

Small ribosomal subunit protein uS9

Small ribosomal subunit protein uS10

Small ribosomal subunit protein uS11

Small ribosomal subunit protein uS12

Small ribosomal subunit protein uS13

Small ribosomal subunit protein uS14

Small ribosomal subunit protein uS15

Small ribosomal subunit protein bS16

Small ribosomal subunit protein uS17

Small ribosomal subunit protein bS18

Small ribosomal subunit protein uS19

Small ribosomal subunit protein bS20

30S ribosomal protein S21

Ribosome hibernation promoting factor

Ribosome modulation factor

Ribonuclease I

Small ribosomal subunit protein bS1

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