SMTL ID : 7bwd.1

Structure of Dot1L-H2BK34ub Nucleosome Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-2-2-2-2-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.1: 17 residues within 4Å: Chain A: P.133, E.134, V.135, Y.136, G.137, T.139, D.161, G.163, S.164, Q.168, V.169, E.186, K.187, F.223, F.239, N.241, F.245 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.139, A:F.239 Hydrogen bonds: A:T.139, A:G.163, A:Q.168 pi-Stacking: A:F.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Structure of the Dot1L-H2BK34ub Nucleosome Complex Reveals an Unprecedented Crosstalk Activation Mechanism through Nucleosome Shape Distortion. To Be Published

Release Date

2021-04-14

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A
Histone H4: BI
Histone H2A type 1-B/E: CH
Histone H2B type 1-K: DG
Histone H3.1: EF
Ubiquitin: LM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
F

I
B

C
G

H
C

D
H

G
D

E
E

F
A

L
L

M
M

Histone-lysine N-methyltransferase, H3 lysine-79 specific

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-K

Histone H3.1

Ubiquitin

Related Entries With Identical Sequence