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SMTL ID : 7jnw.1

Carbonic Anhydrase II Complexed with N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)isobutyramide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: VFM.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x VFM: 2-methyl-N-(5-sulfamoyl-1,3,4-thiadiazol-2-yl)propanamide(Non-covalent)

VFM.2:	15 residues within 4Å: Chain A: I.91, Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, W.208 Ligands: ZN.1, VFM.3, GOL.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.91, A:F.130 Hydrogen bonds: A:T.198, A:T.198, A:T.199 Water bridges: A:T.199, A:T.199
VFM.3:	8 residues within 4Å: Chain A: I.91, F.130, G.131, V.134, L.197, P.201, L.203 Ligands: VFM.2 5 PLIP interactions: 5 interactions with chain A Water bridges: A:D.129, A:G.131, A:G.131, A:G.131 pi-Stacking: A:F.130

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

6 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244, R.245, P.246

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5:

10 residues within 4Å:

Chain A: W.5, N.62, H.64, A.65, N.67, Q.92, H.94, H.96, T.199
Ligands: VFM.2

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:H.64, A:T.199, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Andring, J.T. et al., Structural Basis of Nanomolar Inhibition of Tumor-Associated Carbonic Anhydrase IX: X-Ray Crystallographic and Inhibition Study of Lipophilic Inhibitors with Acetazolamide Backbone. J.Med.Chem. (2020)

Release Date

2020-11-04

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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