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SMTL ID : 7k6j.1

Carbonic Anhydrase II complexed with 4-(2-(3-(4-methylphenyl)ureido)ethylsulfonamido)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: VYY.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x VYY: 4-{[(2-{[(4-methylphenyl)carbamoyl]amino}ethyl)sulfonyl]amino}benzene-1-sulfonamide(Non-covalent)

VYY.2:

17 residues within 4Å:

Chain A: N.67, E.69, F.70, I.91, Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.1, GOL.4

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:E.69, A:I.91, A:V.121, A:L.197, A:L.197
Hydrogen bonds: A:N.67, A:Q.92, A:T.198, A:T.198
Water bridges: A:E.69, A:E.69

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

4 residues within 4Å:

Chain A: Y.7, P.13, D.242, W.244

3 PLIP interactions:

3 interactions with chain A

Salt bridges: A:D.242
pi-Cation interactions: A:W.244, A:W.244

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: VYY.2

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67
Water bridges: A:H.96, A:T.199

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Akgul, O. et al., Handling drug-target selectivity: A study on ureido containing Carbonic Anhydrase inhibitors. Eur.J.Med.Chem. (2021)

Release Date

2020-12-23

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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