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SMTL ID : 7nh6.1

Crystal structure of human carbonic anhydrase II with 3-(3-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methyl)ureido)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: UDE.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: UDE.3

7 PLIP interactions:

7 interactions with chain A

Hydrogen bonds: A:N.62, A:H.64, A:N.67, A:Q.92
Water bridges: A:H.96, A:T.199, A:T.199

1 x UDE: 3-(3-((1-(2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-3-yl)-1H-1,2,3-triazol-4-yl)methyl)ureido)benzenesulfonamide(Non-covalent)

UDE.3:

15 residues within 4Å:

Chain A: H.94, H.96, H.119, V.121, F.130, G.131, V.142, L.197, T.198, T.199, P.200, P.201, W.208
Ligands: ZN.1, GOL.2

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.121, A:L.197, A:L.197
Hydrogen bonds: A:G.131, A:T.198, A:T.198, A:T.199, A:P.200, A:P.200

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Plyasova, A.A. et al., Mechanisms of the Antiproliferative and Antitumor Activity of Novel Telomerase-Carbonic Anhydrase Dual-Hybrid Inhibitors. J.Med.Chem. (2021)

Release Date

2022-02-23

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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