SMTL ID : 8bb5.1

Structure of human WDR5 and pVHL:ElonginC:ElonginB bound to PROTAC with Aryl linker

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.20 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
10 x SCN: THIOCYANATE ION(Non-functional Binders)
1 x Q43: ~{N}-[5-[4-[[4-[2-[[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-2-oxidanylidene-ethyl]phenyl]methylcarbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanyl-4-(trifluoromethyl)pyridine-3-carboxamide(Non-covalent)
4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x K: POTASSIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Schwalm, M.P. et al., Tracking the PROTAC degradation pathway in living cells highlights the importance of ternary complex measurement for PROTAC optimization. Cell Chem Biol (2023)
Release Date
2022-11-09
Peptides
Elongin-B: A
Elongin-C: B
von Hippel-Lindau disease tumor suppressor: C
WD repeat-containing protein 5: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Elongin-B

Elongin-C

von Hippel-Lindau disease tumor suppressor

WD repeat-containing protein 5

Related Entries With Identical Sequence

1lqb.1 | 1lqb.2 | 3ztd.1 | 3ztd.2 | 3ztd.3 | 3ztd.4 | 4awj.1 | 4awj.2 | 4awj.3 | 4awj.4 | 4b95.1 | 4b95.2 | 4b95.3 | 4b95.4 | 4b9k.1 | 4b9k.2 | 4b9k.3 | 4b9k.4 | 4bks.1 | 4bks.2 | 4bks.3 | 4bks.4 | 4bkt.1 | 4bkt.2 | 4bkt.3 | 4bkt.4 | 4w9c.1 | 4w9c.2 | 4w9c.3 | 4w9c.4  more...