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SMTL ID : 8bjx.1

Crystal structure of human Carbonic anhydrase II in complex with (R)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.28 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: QKO.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x QKO: 1-[(3~{R})-1-(6-nitropyridin-2-yl)pyrrolidin-3-yl]-3-(4-sulfamoylphenyl)thiourea(Non-covalent)

QKO.2:

17 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, G.131, V.134, Q.135, V.142, L.197, T.198, T.199, P.201, W.208
Ligands: ZN.1, GOL.3

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:V.121, A:L.197, A:L.197, A:P.201
Hydrogen bonds: A:G.131, A:T.198, A:T.198
Water bridges: A:T.199

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: QKO.2

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:H.64, A:T.199

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4:

7 residues within 4Å:

Chain A: W.5, N.11, H.15, W.16, K.18, D.19, F.20

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:K.18, A:D.19
Salt bridges: A:D.19

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Angeli, A. et al., Crystal structure of human Carbonic anhydrase II in complex with (R)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide. To Be Published

Release Date

2023-11-22

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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