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SMTL ID : 8boe.1

Human Carbonic Anhydrase I in complex with (S)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: QKO.3

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:N.67, A:Q.92
Water bridges: A:H.64, A:T.199

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: QKO.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x QKO: 1-[(3~{R})-1-(6-nitropyridin-2-yl)pyrrolidin-3-yl]-3-(4-sulfamoylphenyl)thiourea(Non-covalent)

QKO.3:

15 residues within 4Å:

Chain A: E.69, I.91, Q.92, H.94, H.96, H.119, V.121, F.130, V.142, L.197, T.198, T.199, W.208
Ligands: GOL.1, ZN.2

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:I.91, A:V.121, A:F.130, A:L.197
Hydrogen bonds: A:E.69, A:T.198, A:T.198
Water bridges: A:E.69

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Angeli, A. et al., First-in-Class Dual Hybrid Carbonic Anhydrase Inhibitors and Transient Receptor Potential Vanilloid 1 Agonists Revert Oxaliplatin-Induced Neuropathy. J.Med.Chem. (2023)

Release Date

2023-11-29

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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