- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 2.20 Å
- Oligo State
- hetero-1-1-1-1-1-1-1-1-mer
- Ligands
- 1 x YQM: Eravacycline(Non-functional Binders)
- 32 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.34: 5 residues within 4Å:- Chain A: U.1224, A.1225, C.1322
- Chain G: G.99, Q.100
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:Q.100
K.35: 5 residues within 4Å:- Chain A: A.978, C.979, G.1222, C.1322
- Ligands: MG.21
No protein-ligand interaction detected (PLIP)K.36: 5 residues within 4Å:- Chain A: G.1053, G.1058, C.1059, G.1198, U.1199
No protein-ligand interaction detected (PLIP)K.37: 4 residues within 4Å:- Chain A: G.976, C.1359, G.1361, A.1362
No protein-ligand interaction detected (PLIP)K.38: 5 residues within 4Å:- Chain A: A.949, G.971, G.1233, C.1234, U.1364
No protein-ligand interaction detected (PLIP)K.39: 5 residues within 4Å:- Chain A: U.1073, G.1074, A.1082, U.1083, G.1084
No protein-ligand interaction detected (PLIP)K.40: 6 residues within 4Å:- Chain A: C.1051, U.1052, C.1200, U.1205, G.1206, G.1207
No protein-ligand interaction detected (PLIP)K.41: 3 residues within 4Å:- Chain A: A.1319, C.1322, G.1323
No protein-ligand interaction detected (PLIP)K.42: 3 residues within 4Å:- Chain A: C.1303, G.1304, G.1305
No protein-ligand interaction detected (PLIP)K.43: 4 residues within 4Å:- Chain A: U.943, G.944, U.1232, G.1233
No protein-ligand interaction detected (PLIP)K.44: 4 residues within 4Å:- Chain A: U.943, G.944, G.945, G.1337
No protein-ligand interaction detected (PLIP)K.45: 4 residues within 4Å:- Chain A: U.1330
- Chain G: T.20, I.22, V.25
5 PLIP interactions:3 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:T.20, G:I.22, G:V.25, H2O.2, H2O.14
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Paternoga, H. et al., Structural conservation of antibiotic interaction with ribosomes. Nat.Struct.Mol.Biol. (2023)
- Release Date
- 2023-08-02
- Peptides
- 30S ribosomal protein S2: B
Small ribosomal subunit protein uS3: C
30S ribosomal protein S7: D
Small ribosomal subunit protein uS9: E
Small ribosomal subunit protein uS10: F
Small ribosomal subunit protein uS13: G
Small ribosomal subunit protein uS14: H
Small ribosomal subunit protein uS19: I - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
BC
CD
GE
IF
JG
MH
NI
S
SMTL ID : 8cf8.1
Eravacycline bound to the 30S head
30S ribosomal protein S2
Small ribosomal subunit protein uS3
30S ribosomal protein S7
Small ribosomal subunit protein uS9
Small ribosomal subunit protein uS10
Small ribosomal subunit protein uS13
Small ribosomal subunit protein uS14
Small ribosomal subunit protein uS19
Related Entries With Identical Sequence
3j9y.1 | 3j9z.1 | 3ja1.1 | 3jbu.1 | 3jbv.1 | 3jcd.1 | 3jce.1 | 3jcj.1 | 3jcn.1 | 3w1y.1 | 3w1y.2 | 4adv.1 | 4v4h.1 | 4v4h.2 | 4v4q.1 | 4v4q.2 | 4v50.1 | 4v50.2 | 4v52.1 | 4v52.2 | 4v53.1 | 4v53.2 | 4v54.1 | 4v54.2 | 4v55.1 | 4v55.2 | 4v56.1 | 4v56.2 | 4v57.1 | 4v57.2 more...less...4v5b.1 | 4v5b.2 | 4v5y.1 | 4v5y.2 | 4v64.1 | 4v64.2 | 4v65.1 | 4v66.1 | 4v6c.1 | 4v6c.2 | 4v6d.1 | 4v6d.2 | 4v6e.1 | 4v6e.2 | 4v6k.1 | 4v6l.1 | 4v6m.1 | 4v6n.1 | 4v6o.1 | 4v6p.1 | 4v6q.1 | 4v6r.1 | 4v6s.1 | 4v6v.1 | 4v6y.1 | 4v6z.1 | 4v70.1 | 4v71.1 | 4v72.1 | 4v73.1 | 4v74.1 | 4v75.1 | 4v76.1 | 4v77.1 | 4v78.1 | 4v79.1 | 4v7a.1 | 4v7b.1 | 4v7c.1 | 4v7d.1 | 4v7i.1 | 4v85.1 | 4v89.1 | 4v9c.1 | 4v9c.2 | 4v9o.1 | 4v9o.2 | 4v9o.3 | 4v9o.4 | 4v9p.1 | 4v9p.2 | 4v9p.3 | 4v9p.4 | 4woi.1 | 4woi.2 | 4www.1 | 4www.2 | 5afi.1 | 5h5u.1 | 5iqr.1 | 5jte.1 | 5ju8.1 | 5kcr.1 | 5kcs.1 | 5kps.1 | 5kpv.1 | 5kpw.1 | 5kpx.1 | 5l3p.1 | 5mdv.1 | 5mdw.1 | 5mdy.1 | 5mdz.1 | 5me0.1 | 5me1.1 | 5my1.1 | 5nwy.1 | 5u4i.1 | 5u4j.1 | 5u9f.1 | 5u9g.1 | 5uz4.1 | 6by1.1 | 6by1.2 | 6c4i.1 | 6dnc.1 | 6ogf.1 | 6ogg.1 | 6ogi.1 | 6om6.1 | 6q98.1 | 6szs.1 | 6tbv.1 | 6tc3.1 | 6vwl.1 | 6vwm.1 | 6vwn.1 | 6vyt.14 | 6vyt.16 | 6vyt.20 | 6vyt.22 | 6vyt.23 | 6vyt.26 | 6vyt.30 | 6vyt.31 | 6vyx.15 | 6vyx.17 | 6vyx.21 | 6vyx.23 | 6vyx.24 | 6vyx.27 | 6vyx.31 | 6vyx.32 | 6vyz.15 | 6vyz.21 | 6vyz.23 | 6vyz.24 | 6vyz.27 | 6vyz.31 | 6vyz.32 | 6vzj.14 | 6vzj.16 | 6vzj.26 | 6w6k.1 | 6w77.1 | 6w7m.1 | 6w7n.1 | 6xdq.17 | 6xdq.19 | 6xdq.23 | 6xdq.25 | 6xdq.26 | 6xdq.29 | 6xdq.33 | 6xdq.34 | 6xij.15 | 6xij.17 | 6xij.21 | 6xij.23 | 6xij.24 | 6xij.27 | 6xij.31 | 6xij.32 | 6ysr.1 | 6yss.1 | 6yst.1 | 6ysu.1 | 6ztj.1 | 6ztj.2 | 6ztj.8 | 6ztj.9 | 6ztj.12 | 6ztj.13 | 6ztj.18 | 6ztl.1 | 6ztm.1 | 6ztn.1 | 6ztn.2 | 6ztn.8 | 6ztn.9 | 6ztn.12 | 6ztn.13 | 6ztn.18 | 6zto.1 | 6ztp.1 | 6zu1.1 | 7af3.1 | 7af5.1 | 7af8.1 | 7afa.1 | 7afd.1 | 7afh.1 | 7afk.1 | 7afn.1 | 7boe.1 | 7boh.1 | 7cpj.1 | 7d6z.1 | 7d80.1 | 7k00.1 | 7n1p.1 | 7n2c.1 | 7n2u.1 | 7n2v.1 | 7n30.1 | 7n31.1 | 7nar.1 | 7nat.1 | 7nau.1 | 7nav.1 | 7nax.1 | 7nwt.1 | 7o19.1 | 7o1a.1 | 7o1c.1 | 7oe0.1 | 7oe1.1 | 7oiz.1 | 7oj0.1 | 7otc.1 | 7p3k.1 | 7pjs.1 | 7pjt.1 | 7pju.1 | 7pjv.1 | 7pjw.1 | 7pjx.1 | 7pjy.1 | 7pjz.1 | 7q4k.1 | 7qg8.1 | 7qgn.1 | 7qgr.1 | 7s1g.1 | 7s1h.1 | 7s1i.1 | 7s1j.1 | 7s1k.1 | 7sa4.1 | 7ug7.1 | 7y7c.1 | 7y7d.1 | 7y7e.1 | 7y7f.1 | 7y7g.1 | 7y7h.1 | 8a3l.1 | 8akn.1 | 8am9.1 | 8aye.1 | 8b0x.1 | 8b7y.1 | 8bf7.1 | 8bge.1 | 8bgh.1 | 8bh4.1 | 8bhj.1 | 8bhl.1 | 8bhn.1 | 8bhp.1 | 8bil.1 | 8bim.1 | 8ca7.1 | 8cai.1 | 8caz.1 | 8cf1.1 | 8cgi.1 | 8cgj.1 | 8eiu.1 | 8ekc.1 | 8emm.1 | 8eyq.1 | 8eyt.1 | 8fiz.1 | 8fto.1 | 8fzd.1 | 8fze.1 | 8fzf.1 | 8fzg.1 | 8fzh.1 | 8fzi.1 | 8fzj.1 | 8g6w.1 | 8g7p.1 | 8g7q.1 | 8g7r.1 | 8g7s.1 | 8hsp.1 | 8htz.1 | 8hu1.1 | 8ifb.1 | 8ifc.1 | 8k3o.1 | 8k4e.1 | 8p16.1 | 8p17.1 | 8p18.1 | 8peg.1 | 8phj.1 | 8pkl.1 | 8pva.1 | 8q4f.1 | 8qbt.1 | 8qk7.1 | 8qoa.1 | 8r6c.1 | 8r8m.1 | 8rcm.5 | 8rcm.6 | 8rcm.7 | 8rcm.8 | 8rcm.15 | 8rcm.16 | 8rcm.19 | 8rcm.20 | 8rcm.21 | 8rcm.22 | 8rcm.27 | 8rcm.28 | 8rcm.29 | 8rcm.30 | 8rcm.38 | 8rcm.39 | 8rct.5 | 8rct.6 | 8rct.7 | 8rct.8 | 8rct.15 | 8rct.16 | 8rct.19 | 8rct.20 | 8rct.21 | 8rct.22 | 8rct.27 | 8rct.28 | 8rct.29 | 8rct.30 | 8rct.38 | 8rct.39 | 8syl.1 | 8upr.16 | 8upr.18 | 8upr.22 | 8upr.24 | 8upr.25 | 8upr.28 | 8upr.32 | 8upr.33 | 8uql.16 | 8uql.18 | 8uql.22 | 8uql.24 | 8uql.25 | 8uql.28 | 8uql.32 | 8uql.33 | 8urx.16 | 8urx.18 | 8urx.22 | 8urx.24 | 8urx.25 | 8urx.28 | 8urx.32 | 8urx.33 | 8vs9.1 | 8vsa.1 | 8yuo.1 | 8yup.1 | 8yuq.1 | 8yur.1 | 8yus.1 | 9ax7.1 | 9cg5.1 | 9cg6.1 | 9cg7.1 | 9fbv.1