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SMTL ID : 8emu.1

Human Carbonic Anhydrase II Heterobifunctional Degraders

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.13 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: WMO.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

2 x WMO: N-(2-methoxyethyl)-4-sulfamoylbenzamide(Non-covalent)

WMO.2:	17 residues within 4Å: Chain A: Q.92, H.94, H.96, E.106, H.119, V.121, F.130, V.134, V.142, L.197, T.198, T.199, P.200, P.201, L.203, W.208 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.121, A:L.197 Hydrogen bonds: A:T.198, A:T.198 Water bridges: A:N.67, A:Q.92, A:T.199
WMO.4:	8 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, D.19, F.20 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.11 Hydrogen bonds: A:H.15, A:D.19, A:D.19

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.3:

6 residues within 4Å:

Chain A: R.27, Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.5

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

O'Herin, C.B. et al., Development of Human Carbonic Anhydrase II Heterobifunctional Degraders. J.Med.Chem. (2023)

Release Date

2023-02-15

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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