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SMTL ID : 8exg.1

Human Carbonic Anhydrase II bound N-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)amino)ethoxy)ethyl)-4-sulfamoylbenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: X38.2

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x X38: (4S)-5-amino-4-{1,3-dioxo-4-[(2-{2-[2-(4-sulfamoylbenzamido)ethoxy]ethoxy}ethyl)amino]-1,3-dihydro-2H-isoindol-2-yl}-5-oxopentanoic acid(Non-covalent)

X38.2:

20 residues within 4Å:

Chain A: E.69, I.91, Q.92, H.94, H.96, E.106, H.119, V.121, D.129, F.130, G.131, V.134, V.142, L.197, T.198, T.199, P.201, L.203, W.208
Ligands: ZN.1

11 PLIP interactions:

11 interactions with chain A

Hydrophobic interactions: A:I.91, A:V.121, A:F.130, A:F.130, A:L.197
Hydrogen bonds: A:Q.92, A:T.198
Water bridges: A:N.67, A:N.67, A:N.67, A:T.199

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.3:

6 residues within 4Å:

Chain A: V.134, Q.135, Q.136, P.137, E.204, C.205

3 PLIP interactions:

3 interactions with chain A

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

O'Herin, C.B. et al., Development of Human Carbonic Anhydrase II Heterobifunctional Degraders. J.Med.Chem. (2023)

Release Date

2023-02-22

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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