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SMTL ID : 8eyl.1

Human Carbonic Anhydrase II with Tert-butyl (2-(2-((2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)amino)ethoxy)ethyl)carbamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: X5F.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.2:

7 residues within 4Å:

Chain A: R.27, V.134, Q.135, Q.136, P.137, E.204, C.205

4 PLIP interactions:

3 interactions with chain A, 1 Ligand-Water interactions

Hydrophobic interactions: A:P.137
Metal complexes: A:Q.136, A:C.205, H₂O.7

2 x X5F: 2-[[(2~{R})-1-azanyl-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]carbamoyl]-6-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethylamino]benzoic acid(Non-covalent)

X5F.3:	20 residues within 4Å: Chain A: D.19, F.20, Q.92, H.94, H.96, E.106, H.119, V.121, F.130, V.134, V.142, S.196, L.197, T.198, T.199, P.200, P.201, L.203, W.208 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.20, A:V.121, A:L.197, A:P.201, A:P.201, A:L.203 Hydrogen bonds: A:T.198, A:T.198 Water bridges: A:Q.92, A:Q.92, A:Q.92, A:T.199
X5F.4:	8 residues within 4Å: Chain A: H.4, W.5, H.10, N.11, H.15, W.16, D.19, F.20 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.11 Hydrogen bonds: A:D.19 Water bridges: A:W.5

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

O'Herin, C.B. et al., Development of Human Carbonic Anhydrase II Heterobifunctional Degraders. J.Med.Chem. (2023)

Release Date

2023-02-22

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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