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SMTL ID : 8qho.1

Human Carbonic Anhydrase II in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:Y.7
Water bridges: A:D.242

1 x ZN: ZINC ION(Non-covalent)

ZN.2:

6 residues within 4Å:

Chain A: H.94, H.96, E.106, H.119, T.198
Ligands: KIX.3

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x KIX: 1,1-bis(oxidanyl)-3,4-dihydro-2,1$l^{4}-benzoxaborinine(Non-covalent)

KIX.3:

11 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, V.142, L.197, T.198, T.199, W.208
Ligands: ZN.2

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:V.121, A:V.142, A:L.197
Hydrogen bonds: A:T.198

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Giovannuzzi, S. et al., Benzoxaborinine, New Chemotype for Carbonic Anhydrase Inhibition: Ex Novo Synthesis, Crystallography, In Silico Studies, and Anti-Melanoma Cell Line Activity. J.Med.Chem. (2024)

Release Date

2024-09-18

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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