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SMTL ID : 8r2f.1

human carbonic anhydrase II in complex with 4-(((dimethoxyphosphoryl)(4-((dimethoxyphosphoryl)((4-sulfamoylphenyl)amino)methyl)phenyl)methyl)amino)phenyl sulfuramidite

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

8 residues within 4Å:

Chain A: N.62, H.64, A.65, N.67, Q.92, H.94, T.199
Ligands: XNF.4

4 PLIP interactions:

4 interactions with chain A

Hydrogen bonds: A:N.62, A:N.67, A:Q.92
Water bridges: A:T.199

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:

4 residues within 4Å:

Chain A: Y.7, D.242, W.244, P.246

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:Y.7

1 x ZN: ZINC ION(Non-covalent)

ZN.3:

5 residues within 4Å:

Chain A: H.94, H.96, H.119, T.198
Ligands: XNF.4

3 PLIP interactions:

3 interactions with chain A

Metal complexes: A:H.94, A:H.96, A:H.119

1 x XNF: 4-[[(~{S})-dimethoxyphosphoryl-[4-[(~{S})-dimethoxyphosphoryl-[(4-sulfamoylphenyl)amino]methyl]phenyl]methyl]amino]benzenesulfonamide(Non-covalent)

XNF.4:

16 residues within 4Å:

Chain A: Q.92, H.94, H.96, H.119, V.121, F.130, Q.135, V.142, L.197, T.198, T.199, P.201, L.203, W.208
Ligands: GOL.1, ZN.3

13 PLIP interactions:

13 interactions with chain A

Hydrophobic interactions: A:V.121, A:F.130, A:L.197, A:L.197, A:P.201, A:P.201, A:L.203, A:L.203
Hydrogen bonds: A:Q.92, A:T.198, A:T.198
Water bridges: A:N.62, A:N.67

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Sobati, M. et al., Sulfonamide-incorporated bis( alpha-aminophosphonates) as promising carbonic anhydrase inhibitors: Design, synthesis, biological evaluation, and X-ray crystallographic studies. Arch Pharm (2024)

Release Date

2024-11-13

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Carbonic anhydrase 2

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