SMTL ID : 8x69.1

Complex structure of AtHPPD with YH23010

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: YDF.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.1 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: YDF.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.7

2 x YDF: 4-(2-fluoranylethyl)-1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3~{H}-1,4-benzodiazepine-2,5-dione(Non-covalent)

YDF.2: 19 residues within 4Å: Chain A: H.198, V.200, L.237, S.239, P.252, N.254, Q.279, H.280, M.307, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.237, A:P.252, A:F.353, A:F.353, A:F.364, A:F.391, A:F.396, A:F.396 Water bridges: A:Q.351 YDF.4: 19 residues within 4Å: Chain B: H.198, V.200, L.237, S.239, P.252, N.254, Q.279, H.280, M.307, Q.351, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.237, B:P.252, B:F.353, B:F.353, B:F.364, B:F.391, B:F.396, B:F.396 Water bridges: B:Q.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, G.-F. et al., Complex structure of AtHPPD with YH23010. To Be Published

Release Date

2024-11-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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