SMTL ID : 8xin.1

Crystal structure of AtHPPD-YH23023 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: 01.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.198, A:H.280, A:E.366, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: 01.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.198, B:H.280, B:E.366, H2O.12

2 x 01: 1,6-dimethyl-7-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-4-[[4-(trifluoromethyl)phenyl]methyl]-3~{H}-1,4-benzodiazepine-2,5-dione

01.2: 23 residues within 4Å: Chain A: H.198, V.200, L.237, S.239, P.252, N.254, Q.279, H.280, M.307, Q.351, F.353, T.354, K.355, P.356, T.362, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.252, A:F.353, A:F.353, A:F.364, A:F.391, A:F.396, A:F.396 Water bridges: A:Q.265, A:Q.351 pi-Stacking: A:F.364 Halogen bonds: A:T.354, A:T.362 01.4: 23 residues within 4Å: Chain B: H.198, V.200, L.237, S.239, P.252, N.254, Q.279, H.280, M.307, Q.351, F.353, T.354, K.355, P.356, T.362, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.252, B:F.353, B:F.353, B:F.364, B:F.391, B:F.396, B:F.396 Water bridges: B:Q.279, B:Q.351 pi-Stacking: B:F.364 Halogen bonds: B:T.354, B:T.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-YH23023 complex. To Be Published

Release Date

2024-12-25

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase

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