SMTL ID : 9d1z.1

Structure of G75Q Ubiquitin bound to KLHDC3-EloB/C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: R.4, L.342, L.345, A.346, Q.349, Y.350 Chain C: E.101, F.102, I.104 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:L.342, A:L.345, A:A.346, C:I.104 Hydrogen bonds: A:A.346 Water bridges: A:Q.349, A:Y.350, A:Y.350, C:E.101, C:I.104 MPD.2: 3 residues within 4Å: Chain A: D.110, N.112, T.113 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.112 Hydrogen bonds: A:N.112 MPD.3: 6 residues within 4Å: Chain A: R.179, I.212, C.214, N.215, R.216, R.218 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.179 Hydrogen bonds: A:R.179, A:N.215 Water bridges: A:R.181 MPD.4: 1 residues within 4Å: Chain A: R.376 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.376

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.C. et al., Structural basis for C-degron selectivity across KLHDCX-family E3 ubiquitin ligases. To Be Published

Release Date

2024-11-20

Peptides

Kelch domain-containing protein 3: A
Elongin-B: B
Elongin-C: C
Ubiquitin: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Kelch domain-containing protein 3

Elongin-B

Elongin-C

Ubiquitin

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