SMTL ID : 9klm.1

Cryo-EM structure of the monomeric Rhodobacter sphaeroides G1C LH1-RC core complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-14-14-1-1-mer

Ligands

32 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 29 residues within 4Å: Chain A: F.98, A.125, I.126, A.128, Y.129, L.132, W.157, V.158, S.159, T.161, G.162, Y.163, N.167, F.168, H.169, H.174, A.177, I.178, F.181, F.182, S.245, C.248, M.249 Chain B: F.198, Y.211 Ligands: BPH.2, BCL.8, BCL.16, BCL.19 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:F.98, A:F.98, A:A.128, A:Y.129, A:T.161, A:Y.163, A:F.168, A:F.168, A:A.177, A:I.178, A:F.181, A:F.181, A:F.182, B:F.198, B:Y.211 Hydrogen bonds: A:S.245 Metal complexes: A:H.174 BCL.8: 22 residues within 4Å: Chain A: I.47, I.50, Y.129, L.132, F.147, I.151, W.152, H.154, L.155, V.158 Chain B: F.198, G.204, I.207, A.208, Y.211, G.212, L.215 Ligands: BCL.1, BPH.2, PGV.17, BCL.19, U10.22 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:I.47, A:I.50, A:Y.129, A:L.132, A:F.147, A:L.155, A:V.158, B:F.198, B:I.207, B:I.207, B:A.208, B:L.215 Metal complexes: A:H.154 pi-Stacking: B:Y.211 BCL.16: 21 residues within 4Å: Chain A: H.169, M.175, I.178, S.179, F.182, T.183, L.186 Chain B: F.68, M.123, W.158, L.161, V.176, I.180, H.183, L.184, T.187 Ligands: BCL.1, U10.4, BCL.19, BPH.20, 01.26 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:I.178, A:I.178, A:L.186, B:F.68, B:L.161, B:V.176, B:I.180, B:L.184 Hydrogen bonds: A:T.183 pi-Stacking: A:F.182 Metal complexes: B:H.183 BCL.19: 28 residues within 4Å: Chain A: V.158, Y.163, H.169, F.182 Chain B: V.127, A.154, L.157, W.158, L.161, W.186, T.187, N.188, F.190, S.191, L.197, F.198, H.203, S.206, I.207, Y.211, V.277, G.281, I.285 Ligands: BCL.1, BCL.8, BCL.16, BPH.20, CDL.28 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:V.127, B:V.127, B:A.154, B:L.157, B:W.158, B:W.158, B:W.186, B:T.187, B:F.190, B:F.198, B:I.207, B:Y.211, B:V.277 Metal complexes: B:H.203 BCL.34: 19 residues within 4Å: Chain 6: A.24, M.28, A.31 Chain D: L.24, F.25, A.28, H.32, L.35, W.43 Chain E: L.30, F.31, V.34, A.35, A.38, H.39, V.42 Ligands: BCL.36, 01.37, LDA.116 13 PLIP interactions: 5 interactions with chain E, 1 interactions with chain 6, 7 interactions with chain D, Hydrophobic interactions: E:L.30, E:F.31, E:F.31, E:V.42, 6:A.24, D:L.24, D:F.25, D:L.35, D:W.43, D:W.43, D:W.43 Hydrogen bonds: E:H.39 Metal complexes: D:H.32 BCL.36: 20 residues within 4Å: Chain D: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain E: F.31, S.32, A.35, I.36, H.39, Y.43, W.48, F.49 Chain F: W.43 Ligands: BCL.34, 01.37, BCL.38, 01.42 14 PLIP interactions: 3 interactions with chain D, 11 interactions with chain E, Hydrophobic interactions: D:I.31, D:L.35, D:Y.41, E:F.31, E:A.35, E:H.39, E:Y.43, E:W.48, E:W.48, E:W.48, E:W.48, E:F.49, E:F.49 Metal complexes: E:H.39 BCL.38: 27 residues within 4Å: Chain D: I.7, W.8, Q.20, F.23, I.31 Chain E: Y.24, F.49 Chain F: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain G: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: LMT.12, BCL.36, 01.37, LMT.39, 01.42, BCL.43 19 PLIP interactions: 6 interactions with chain D, 4 interactions with chain G, 8 interactions with chain F, 1 interactions with chain E, Hydrophobic interactions: D:I.7, D:W.8, D:F.23, D:F.23, D:I.31, D:I.31, G:A.38, G:V.42, G:W.45, F:L.24, F:F.25, F:L.35, F:W.43, F:W.43, F:W.43, F:W.43, E:F.49 Hydrogen bonds: G:H.39 Metal complexes: F:H.32 BCL.43: 22 residues within 4Å: Chain F: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain G: F.31, S.32, A.35, H.39, V.42, Y.43, W.48, F.49 Chain H: W.43, L.44 Ligands: BCL.38, 01.40, BCL.46, LMT.50, 01.51 12 PLIP interactions: 2 interactions with chain F, 9 interactions with chain G, 1 interactions with chain H, Hydrophobic interactions: F:I.31, F:Y.41, G:F.31, G:A.35, G:V.42, G:W.48, G:W.48, G:W.48, G:F.49, G:F.49, H:L.44 Metal complexes: G:H.39 BCL.46: 26 residues within 4Å: Chain F: I.7, V.16, Q.20, F.23, I.31 Chain G: Y.24, F.49 Chain H: G.21, L.24, F.25, A.28, H.32, W.43 Chain I: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.40, LMT.41, BCL.43, PGV.45, BCL.49, 01.51 17 PLIP interactions: 6 interactions with chain H, 4 interactions with chain I, 5 interactions with chain F, 2 interactions with chain G, Hydrophobic interactions: H:F.25, H:W.43, H:W.43, H:W.43, H:W.43, I:A.38, I:V.42, I:V.42, I:W.45, F:I.7, F:V.16, F:F.23, F:I.31, F:I.31, G:Y.24, G:F.49 Metal complexes: H:H.32 BCL.49: 21 residues within 4Å: Chain H: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain I: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain J: W.43 Ligands: BCL.46, 01.47, BCL.53, 01.57 13 PLIP interactions: 2 interactions with chain H, 11 interactions with chain I, Hydrophobic interactions: H:I.31, H:Y.41, I:F.31, I:I.36, I:H.39, I:V.42, I:W.48, I:W.48, I:W.48, I:W.48, I:F.49, I:F.49 Metal complexes: I:H.39 BCL.53: 29 residues within 4Å: Chain H: F.4, I.7, Q.20, F.23, I.31 Chain I: H.21, Y.24, F.49 Chain J: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain K: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: PGV.32, 01.47, LMT.48, BCL.49, 01.55, 01.57, BCL.58 19 PLIP interactions: 7 interactions with chain H, 7 interactions with chain J, 2 interactions with chain I, 3 interactions with chain K, Hydrophobic interactions: H:F.4, H:I.7, H:Q.20, H:F.23, H:F.23, H:I.31, H:I.31, J:F.25, J:L.35, J:W.43, J:W.43, J:W.43, J:W.43, I:Y.24, I:F.49, K:A.38, K:V.42, K:W.45 Metal complexes: J:H.32 BCL.58: 19 residues within 4Å: Chain J: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain K: F.31, A.35, H.39, V.42, Y.43, W.48, F.49 Chain L: W.43 Ligands: BCL.53, 01.55, BCL.61, 01.64 13 PLIP interactions: 10 interactions with chain K, 3 interactions with chain J, Hydrophobic interactions: K:F.31, K:A.35, K:H.39, K:V.42, K:Y.43, K:W.48, K:W.48, K:W.48, K:F.49, J:I.31, J:L.35, J:Y.41 Metal complexes: K:H.39 BCL.61: 22 residues within 4Å: Chain J: F.23, I.31 Chain K: F.49 Chain L: G.21, V.22, L.24, F.25, A.28, H.32, L.35, W.43 Chain M: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.55, BCL.58, 01.64, BCL.65 15 PLIP interactions: 1 interactions with chain K, 8 interactions with chain L, 3 interactions with chain M, 3 interactions with chain J, Hydrophobic interactions: K:F.49, L:V.22, L:F.25, L:L.35, L:W.43, L:W.43, L:W.43, L:W.43, M:A.38, M:V.42, M:W.45, J:F.23, J:I.31, J:I.31 Metal complexes: L:H.32 BCL.65: 22 residues within 4Å: Chain L: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain M: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain N: W.43, L.44 Ligands: 01.56, BCL.61, BCL.68, 01.70 14 PLIP interactions: 1 interactions with chain N, 3 interactions with chain L, 10 interactions with chain M, Hydrophobic interactions: N:L.44, L:I.31, L:L.35, L:Y.41, M:F.31, M:I.36, M:V.42, M:Y.43, M:W.48, M:W.48, M:W.48, M:F.49, M:F.49 Metal complexes: M:H.39 BCL.68: 26 residues within 4Å: Chain L: V.16, Q.20, F.23, I.31 Chain M: Y.24, M.25, F.49 Chain N: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain O: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.56, PGV.62, BCL.65, 01.70, BCL.71 15 PLIP interactions: 4 interactions with chain O, 7 interactions with chain N, 3 interactions with chain L, 1 interactions with chain M, Hydrophobic interactions: O:A.38, O:V.42, O:V.42, O:W.45, N:L.24, N:L.35, N:W.43, N:W.43, N:W.43, N:W.43, L:V.16, L:F.23, L:I.31, M:F.49 Metal complexes: N:H.32 BCL.71: 20 residues within 4Å: Chain N: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain O: F.31, S.32, A.35, H.39, V.42, Y.43, W.48, F.49 Chain P: W.43 Ligands: 01.63, BCL.68, BCL.75, 01.76 13 PLIP interactions: 9 interactions with chain O, 4 interactions with chain N, Hydrophobic interactions: O:F.31, O:V.42, O:Y.43, O:W.48, O:W.48, O:W.48, O:F.49, O:F.49, N:I.31, N:L.35, N:L.35, N:Y.41 Metal complexes: O:H.39 BCL.75: 26 residues within 4Å: Chain N: F.4, Q.20, F.23, I.31 Chain O: Y.24, F.49 Chain P: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain Q: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.63, LDA.69, BCL.71, 01.76, BCL.77, 01.78 17 PLIP interactions: 4 interactions with chain N, 8 interactions with chain P, 3 interactions with chain Q, 2 interactions with chain O, Hydrophobic interactions: N:F.4, N:Q.20, N:F.23, N:I.31, P:L.24, P:F.25, P:L.35, P:W.43, P:W.43, P:W.43, P:W.43, Q:A.38, Q:V.42, Q:W.45, O:Y.24, O:F.49 Metal complexes: P:H.32 BCL.77: 21 residues within 4Å: Chain P: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Q: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain R: W.43 Ligands: BCL.75, 01.78, BCL.80, 01.83 13 PLIP interactions: 11 interactions with chain Q, 2 interactions with chain P, Hydrophobic interactions: Q:F.31, Q:A.35, Q:I.36, Q:V.42, Q:Y.43, Q:Y.43, Q:W.48, Q:W.48, Q:W.48, Q:W.48, P:I.31, P:Y.41 Metal complexes: Q:H.39 BCL.80: 25 residues within 4Å: Chain P: V.16, Q.20, F.23, I.31 Chain Q: Y.24, F.49 Chain R: L.24, F.25, A.28, H.32, L.35, W.43 Chain S: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: PGV.74, BCL.77, 01.78, 01.83, BCL.84, 01.85 15 PLIP interactions: 3 interactions with chain P, 2 interactions with chain Q, 3 interactions with chain S, 7 interactions with chain R, Hydrophobic interactions: P:V.16, P:F.23, P:I.31, Q:Y.24, Q:F.49, S:A.38, S:V.42, S:W.45, R:F.25, R:L.35, R:W.43, R:W.43, R:W.43, R:W.43 Metal complexes: R:H.32 BCL.84: 21 residues within 4Å: Chain R: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain S: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain T: W.43 Ligands: BCL.80, 01.85, BCL.86, 01.87 15 PLIP interactions: 3 interactions with chain R, 12 interactions with chain S, Hydrophobic interactions: R:I.31, R:I.31, R:Y.41, S:F.31, S:A.35, S:I.36, S:V.42, S:Y.43, S:W.48, S:W.48, S:W.48, S:W.48, S:F.49, S:F.49 Metal complexes: S:H.39 BCL.86: 25 residues within 4Å: Chain R: Q.20, F.23, I.31 Chain S: H.21, Y.24, F.49 Chain T: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain U: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: PGV.27, BCL.84, 01.85, 01.87, BCL.91 18 PLIP interactions: 8 interactions with chain T, 5 interactions with chain R, 2 interactions with chain S, 3 interactions with chain U, Hydrophobic interactions: T:L.24, T:F.25, T:L.35, T:W.43, T:W.43, T:W.43, T:W.43, R:Q.20, R:F.23, R:F.23, R:I.31, R:I.31, S:Y.24, S:F.49, U:A.38, U:V.42, U:W.45 Metal complexes: T:H.32 BCL.91: 21 residues within 4Å: Chain T: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain U: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain V: W.43 Ligands: BCL.86, 01.88, BCL.93, 01.95 14 PLIP interactions: 3 interactions with chain T, 11 interactions with chain U, Hydrophobic interactions: T:I.31, T:L.35, T:Y.41, U:F.31, U:A.35, U:I.36, U:V.42, U:Y.43, U:W.48, U:W.48, U:W.48, U:F.49, U:F.49 Metal complexes: U:H.39 BCL.93: 27 residues within 4Å: Chain T: I.7, V.16, Q.20, F.23, I.31 Chain U: H.21, Y.24, F.49 Chain V: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain W: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.88, LDA.89, BCL.91, 01.95, BCL.96 17 PLIP interactions: 6 interactions with chain T, 6 interactions with chain V, 3 interactions with chain W, 2 interactions with chain U, Hydrophobic interactions: T:I.7, T:V.16, T:F.23, T:F.23, T:I.31, T:I.31, V:L.35, V:W.43, V:W.43, V:W.43, V:W.43, W:A.38, W:V.42, W:W.45, U:Y.24, U:F.49 Metal complexes: V:H.32 BCL.96: 21 residues within 4Å: Chain V: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain W: F.31, S.32, A.35, H.39, V.42, Y.43, W.48, F.49 Chain X: W.43, L.44 Ligands: 01.90, BCL.93, BCL.97, 01.100 13 PLIP interactions: 2 interactions with chain V, 1 interactions with chain X, 10 interactions with chain W, Hydrophobic interactions: V:I.31, V:Y.41, X:L.44, W:F.31, W:V.42, W:Y.43, W:Y.43, W:W.48, W:W.48, W:W.48, W:F.49, W:F.49 Metal complexes: W:H.39 BCL.97: 26 residues within 4Å: Chain V: F.4, V.16, Q.20, F.23, I.31 Chain W: Y.24, F.49 Chain X: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain Y: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.90, PGV.94, BCL.96, 01.100, BCL.101 18 PLIP interactions: 8 interactions with chain X, 5 interactions with chain V, 2 interactions with chain W, 3 interactions with chain Y, Hydrophobic interactions: X:L.24, X:F.25, X:L.35, X:W.43, X:W.43, X:W.43, X:W.43, V:F.4, V:V.16, V:F.23, V:F.23, V:I.31, W:Y.24, W:F.49, Y:A.38, Y:W.45 Metal complexes: X:H.32 Hydrogen bonds: Y:H.39 BCL.101: 20 residues within 4Å: Chain X: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain Y: F.31, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain Z: W.43 Ligands: BCL.97, 01.98, BCL.103, 01.105 13 PLIP interactions: 11 interactions with chain Y, 2 interactions with chain X, Hydrophobic interactions: Y:F.31, Y:A.35, Y:H.39, Y:V.42, Y:Y.43, Y:W.48, Y:W.48, Y:W.48, Y:F.49, Y:F.49, X:I.31, X:Y.41 Metal complexes: Y:H.39 BCL.103: 22 residues within 4Å: Chain 0: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Chain X: Q.20, F.23, I.31 Chain Y: F.49 Chain Z: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Ligands: 01.98, BCL.101, 01.105, BCL.106 15 PLIP interactions: 3 interactions with chain 0, 4 interactions with chain X, 7 interactions with chain Z, 1 interactions with chain Y, Hydrophobic interactions: 0:A.38, 0:W.45, X:Q.20, X:F.23, X:F.23, X:I.31, Z:L.24, Z:L.35, Z:W.43, Z:W.43, Z:W.43, Z:W.43, Y:F.49 Hydrogen bonds: 0:H.39 Metal complexes: Z:H.32 BCL.106: 20 residues within 4Å: Chain 0: F.31, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain 1: W.43 Chain Z: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Ligands: 01.99, BCL.103, BCL.108, 01.109 16 PLIP interactions: 14 interactions with chain 0, 2 interactions with chain Z, Hydrophobic interactions: 0:F.31, 0:A.35, 0:I.36, 0:H.39, 0:V.42, 0:Y.43, 0:W.48, 0:W.48, 0:W.48, 0:W.48, 0:W.48, 0:F.49, 0:F.49, Z:I.31, Z:Y.41 Metal complexes: 0:H.39 BCL.108: 21 residues within 4Å: Chain 0: Y.24, F.49 Chain 1: G.21, L.24, A.28, H.32, W.43 Chain 2: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Chain Z: Q.20, F.23, I.31 Ligands: 01.99, BCL.106, 01.109, BCL.110 12 PLIP interactions: 4 interactions with chain 2, 3 interactions with chain Z, 4 interactions with chain 1, 1 interactions with chain 0, Hydrophobic interactions: 2:A.38, 2:V.42, 2:W.45, Z:Q.20, Z:F.23, Z:I.31, 1:L.24, 1:W.43, 1:W.43, 0:F.49 Hydrogen bonds: 2:H.39 Metal complexes: 1:H.32 BCL.110: 21 residues within 4Å: Chain 1: L.24, L.27, A.28, I.31, H.32, L.35, Y.41 Chain 2: F.31, S.32, A.35, I.36, H.39, V.42, Y.43, W.48, F.49 Chain 3: W.43 Ligands: 01.104, BCL.108, BCL.111, 01.112 16 PLIP interactions: 12 interactions with chain 2, 4 interactions with chain 1, Hydrophobic interactions: 2:F.31, 2:A.35, 2:I.36, 2:H.39, 2:V.42, 2:Y.43, 2:W.48, 2:W.48, 2:W.48, 2:W.48, 2:F.49, 1:L.27, 1:I.31, 1:L.35, 1:Y.41 Metal complexes: 2:H.39 BCL.111: 21 residues within 4Å: Chain 1: F.23, I.31 Chain 2: F.49 Chain 3: G.21, L.24, F.25, A.28, H.32, L.35, W.43 Chain 4: F.31, V.34, A.35, A.38, H.39, V.42, W.45 Ligands: 01.104, BCL.110, 01.112, BCL.113 10 PLIP interactions: 4 interactions with chain 3, 3 interactions with chain 1, 2 interactions with chain 4, 1 interactions with chain 2, Hydrophobic interactions: 3:L.24, 3:L.35, 3:W.43, 3:W.43, 1:F.23, 1:I.31, 1:I.31, 4:A.38, 4:W.45, 2:F.49 BCL.113: 14 residues within 4Å: Chain 3: L.24, L.27, A.28, I.31, H.32, L.35 Chain 4: F.31, S.32, A.35, I.36, H.39, V.42, W.48 Ligands: BCL.111 6 PLIP interactions: 5 interactions with chain 4, 1 interactions with chain 3, Hydrophobic interactions: 4:F.31, 4:H.39, 4:V.42, 4:W.48, 3:L.27 Metal complexes: 4:H.39

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.2: 29 residues within 4Å: Chain A: T.39, F.42, A.43, G.46, I.50, A.94, A.97, F.98, W.101, E.105, I.118, A.121, F.122, F.124, A.125, F.147, Y.149, G.150, H.154, V.242 Chain B: Y.211, A.214, L.215, M.219, W.253, M.257 Ligands: BCL.1, BCL.8, U10.22 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.43, A:I.50, A:A.94, A:A.97, A:A.121, A:F.122, A:F.122, A:F.124, A:A.125, A:F.147, A:Y.149, A:Y.149, A:V.242, A:V.242, B:Y.211, B:A.214 pi-Stacking: A:F.122 BPH.20: 26 residues within 4Å: Chain A: F.182, A.185, L.186, L.190, L.220, V.221 Chain B: S.60, L.61, G.64, L.65, W.67, F.68, A.126, V.127, W.130, T.147, A.150, F.151, A.154, A.274, V.275, T.278 Ligands: BCL.16, BCL.19, CDL.28, PGV.94 14 PLIP interactions: 4 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:F.182, A:A.185, A:L.186, A:L.190, B:L.65, B:W.67, B:F.68, B:F.68, B:A.126, B:A.150, B:F.151, B:F.151, B:F.151 pi-Stacking: B:F.151

3 x U10: UBIQUINONE-10(Non-covalent)

U10.3: 17 residues within 4Å: Chain A: S.179, F.180, T.183, A.187, H.191, L.194, V.195, E.213, D.214, F.217, Y.223, S.224, I.225, G.226, T.227, I.230, L.233 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.180, A:A.187, A:F.217, A:F.217, A:Y.223, A:I.225, A:I.230, A:I.230, A:L.233, A:L.233 Hydrogen bonds: A:H.191, A:I.225, A:G.226 U10.4: 14 residues within 4Å: Chain A: P.172, I.176, S.179, W.264, W.266, W.267 Chain B: L.87, L.90, F.91, I.180 Ligands: PGV.6, PGV.13, PGV.14, BCL.16 10 PLIP interactions: 6 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:L.90, B:F.91, B:F.91, B:I.180, A:I.176, A:W.264 Hydrogen bonds: B:F.91 pi-Stacking: B:F.91, A:W.267, A:W.267 U10.22: 26 residues within 4Å: Chain A: F.30, V.32, G.36, F.40, W.101 Chain B: L.215, L.216, M.219, H.220, T.223, I.224, A.246, A.249, A.250, W.253, M.257, F.259, N.260, A.261, T.262, M.263, I.266, W.269 Ligands: BPH.2, BCL.8, PGV.44 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.215, B:L.216, B:M.219, B:W.253, B:M.257, B:F.259, B:A.261, B:I.266, B:W.269, B:W.269, A:F.30, A:V.32, A:V.32, A:F.40, A:F.40, A:W.101 Hydrogen bonds: B:T.223, B:A.261

13 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.5: 11 residues within 4Å: Chain A: I.47, G.58, T.59, W.60, N.61, P.62, Q.63 Chain J: L.33, S.37 Ligands: PGV.17, LMT.52 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain J Hydrophobic interactions: A:I.47, A:W.60, A:P.62, J:L.33 Hydrogen bonds: A:W.60, A:Q.63 PGV.6: 11 residues within 4Å: Chain 5: W.32, L.36 Chain A: W.256, D.262, W.263, Q.265, W.266 Ligands: U10.4, PGV.13, PGV.14, LMT.114 4 PLIP interactions: 3 interactions with chain 5, 1 interactions with chain A Hydrophobic interactions: 5:W.32, 5:W.32, 5:L.36, A:W.266 PGV.13: 19 residues within 4Å: Chain 5: F.33 Chain A: W.272, W.273, I.276, P.277 Chain B: W.76, N.82, P.83, A.84, L.87 Chain X: M.30, I.34 Chain Z: L.33, S.37, E.45 Ligands: U10.4, PGV.6, 01.26, LMT.102 13 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B, 2 interactions with chain X, 1 interactions with chain Z, 1 interactions with chain 5 Hydrophobic interactions: A:W.272, A:W.272, A:W.273, A:W.273, B:W.76, B:P.83, B:A.84, B:L.87, B:L.87, X:I.34, X:I.34, Z:L.33, 5:F.33 PGV.14: 15 residues within 4Å: Chain 6: L.55, P.56, N.60 Chain A: P.172, A.173, I.176, L.247, I.251, I.255, W.256, D.258, W.260, W.263 Ligands: U10.4, PGV.6 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain 6 Hydrophobic interactions: A:P.172, A:P.172, A:A.173, A:I.176, A:L.247, A:I.251, A:I.255, A:W.256, A:W.260, A:W.263 Hydrogen bonds: A:D.258, 6:N.60 PGV.17: 21 residues within 4Å: Chain A: I.50, P.62, Q.63, Y.149, I.151, W.152 Chain B: P.201, G.204, L.205, H.302, G.303, M.304 Chain C: N.9, I.17, Y.18, W.21, L.24 Ligands: PGV.5, BCL.8, LMT.30, PGV.31 11 PLIP interactions: 3 interactions with chain C, 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: C:W.21, C:L.24, A:I.50, A:I.151, A:I.151, A:W.152, A:W.152 Hydrogen bonds: C:N.9, A:Q.63, B:H.302 Salt bridges: B:H.302 PGV.27: 21 residues within 4Å: Chain B: F.121, F.124, V.125, W.128, S.129, G.132, Y.135, L.136, Q.139 Chain P: R.15 Chain R: A.19, V.22, F.23, L.26, L.27 Chain T: F.25 Ligands: 01.26, PGV.74, LMT.81, LDA.82, BCL.86 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain R Hydrophobic interactions: B:V.125, B:W.128, B:Y.135, B:L.136, R:V.22 PGV.31: 17 residues within 4Å: Chain A: F.30 Chain B: F.209, R.254, M.257, G.258, F.259, W.269, M.273 Chain C: I.28, Q.32, Y.40, Q.53, G.54, P.55, F.56 Ligands: PGV.17, PGV.44 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:I.28, B:F.259, B:F.259, B:W.269 Hydrogen bonds: C:Y.40 Salt bridges: B:R.254 PGV.32: 20 residues within 4Å: Chain C: A.51, N.52, Q.53, G.54 Chain H: F.11, D.12, R.15, V.16, A.19, Q.20, F.23 Chain J: D.12, R.14, R.15, V.18, V.22, F.25 Ligands: PGV.44, PGV.45, BCL.53 7 PLIP interactions: 2 interactions with chain H, 4 interactions with chain J, 1 interactions with chain C Hydrophobic interactions: H:F.23, J:V.18, J:V.22, J:F.25 Hydrogen bonds: H:D.12, J:D.12, C:Q.53 PGV.44: 14 residues within 4Å: Chain A: P.29, F.30, A.44, I.47 Chain B: R.254 Chain C: N.52, G.54, P.55, F.56 Chain H: R.15 Ligands: U10.22, PGV.31, PGV.32, PGV.45 10 PLIP interactions: 4 interactions with chain C, 2 interactions with chain H, 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: C:P.55, C:F.56, A:A.44, A:I.47, A:I.47 Hydrogen bonds: C:N.52, C:N.52, B:R.254 Salt bridges: H:R.15, H:R.15 PGV.45: 20 residues within 4Å: Chain A: V.27, G.28, F.40 Chain C: E.94 Chain F: F.11, R.15, V.16, A.19 Chain H: D.12, R.14, R.15, V.18, A.19, V.22, F.23, F.25, L.26 Ligands: PGV.32, PGV.44, BCL.46 19 PLIP interactions: 11 interactions with chain H, 5 interactions with chain F, 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: H:R.15, H:R.15, H:V.18, H:V.22, H:F.25, H:L.26, F:F.11, F:V.16, F:A.19, A:F.40 Hydrogen bonds: H:D.12, H:R.14, H:R.15, A:G.28, C:E.94 Salt bridges: H:R.14, H:R.15, F:R.15, F:R.15 PGV.62: 19 residues within 4Å: Chain L: F.11, D.12, R.15, V.16, F.23 Chain N: R.14, R.15, V.18, A.19, G.21, V.22, F.23, F.25, L.26 Chain P: F.25 Ligands: CDL.59, CDL.67, BCL.68, 01.70 16 PLIP interactions: 10 interactions with chain N, 5 interactions with chain L, 1 interactions with chain P Hydrophobic interactions: N:R.15, N:V.18, N:A.19, N:V.22, N:V.22, N:F.23, N:F.23, N:F.25, N:L.26, L:F.11, L:V.16, L:F.23, P:F.25 Salt bridges: N:R.14, L:R.15, L:R.15 PGV.74: 14 residues within 4Å: Chain B: W.128, W.131 Chain P: F.11, D.12, R.15, V.16 Chain R: V.18, G.21, V.22 Ligands: PGV.27, BCL.80, LMT.81, LDA.82, 01.83 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain P, 1 interactions with chain R Hydrophobic interactions: B:W.128, B:W.131, B:W.131, R:V.18 Hydrogen bonds: P:D.12 PGV.94: 15 residues within 4Å: Chain V: F.11, R.15, V.16, A.19, F.23 Chain X: R.14, R.15, F.17, V.18, G.21, V.22, L.26 Ligands: BPH.20, BCL.97, 01.100 7 PLIP interactions: 4 interactions with chain V, 3 interactions with chain X Hydrophobic interactions: V:A.19, V:F.23, V:F.23, X:V.22, X:V.22, X:L.26 Salt bridges: V:R.15

10 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.7: 8 residues within 4Å: Chain A: A.102, V.106, Y.116, P.119, F.120, A.123 Ligands: LDA.10, LDA.18 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.102, A:A.123 pi-Cation interactions: A:Y.116 LDA.9: 10 residues within 4Å: Chain 6: W.33, V.37 Chain A: T.16, L.17, V.18, L.103, R.110 Ligands: LDA.10, LMT.12, LDA.115 5 PLIP interactions: 3 interactions with chain 6, 2 interactions with chain A Hydrophobic interactions: 6:W.33, 6:W.33, 6:V.37, A:V.18, A:L.103 LDA.10: 7 residues within 4Å: Chain 6: T.41 Chain A: T.95, V.99, L.103, L.130 Ligands: LDA.7, LDA.9 4 PLIP interactions: 1 interactions with chain 6, 3 interactions with chain A Hydrophobic interactions: 6:T.41, A:T.95, A:V.99, A:L.130 LDA.18: 7 residues within 4Å: Chain A: Y.116, F.120 Chain B: E.3, Q.5, I.7 Chain C: N.206 Ligands: LDA.7 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.120, A:F.120, A:F.120, B:E.3, B:Q.5, B:I.7 Salt bridges: B:E.3 LDA.69: 9 residues within 4Å: Chain N: F.11, R.15, V.16 Chain P: R.14, F.17, V.18, G.21 Ligands: BCL.75, 01.76 4 PLIP interactions: 2 interactions with chain N, 2 interactions with chain P Hydrophobic interactions: N:V.16, P:R.14, P:V.18 pi-Cation interactions: N:F.11 LDA.82: 9 residues within 4Å: Chain B: F.124, W.128, F.163 Chain R: L.26, V.29, M.30 Ligands: 01.26, PGV.27, PGV.74 6 PLIP interactions: 2 interactions with chain R, 4 interactions with chain B Hydrophobic interactions: R:L.26, R:V.29, B:F.124, B:W.128, B:W.128, B:W.128 LDA.89: 10 residues within 4Å: Chain B: F.62 Chain T: F.11, R.15, V.16 Chain V: F.17, V.18, G.21, V.22 Ligands: BCL.93, 01.95 2 PLIP interactions: 2 interactions with chain T Hydrophobic interactions: T:R.15, T:V.16 LDA.92: 8 residues within 4Å: Chain B: I.73, Y.77, L.110, K.111 Chain V: L.36, S.37, N.42, E.45 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain V Hydrophobic interactions: B:Y.77, B:L.110, B:K.111 Hydrogen bonds: V:N.42, V:E.45 Salt bridges: V:E.45 LDA.115: 9 residues within 4Å: Chain 6: K.29, W.33 Chain A: L.17, V.18 Chain D: V.18, V.22 Ligands: LDA.9, LMT.12, LMT.15 6 PLIP interactions: 3 interactions with chain 6, 1 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: 6:W.33, 6:W.33, D:V.22, A:V.18, A:V.18 pi-Cation interactions: 6:W.33 LDA.116: 6 residues within 4Å: Chain 6: G.32, G.35, G.36, F.39 Chain D: F.25 Ligands: BCL.34 2 PLIP interactions: 1 interactions with chain 6, 1 interactions with chain D Hydrogen bonds: 6:G.35 Hydrophobic interactions: D:F.25

25 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.11: 13 residues within 4Å: Chain A: G.78, A.79, P.80, L.81, I.92 Chain D: M.30, S.37, T.38, P.39 Chain F: N.42, E.45 Ligands: LMT.33, LMT.39 Ligand excluded by PLIP LMT.12: 22 residues within 4Å: Chain A: L.22, F.23, F.34, V.37, A.38, F.42, I.92, T.95, G.96, V.99, S.100 Chain D: V.16, A.19, Q.20, V.22, F.23, L.26 Ligands: LDA.9, LMT.15, BCL.38, LMT.39, LDA.115 Ligand excluded by PLIP LMT.15: 14 residues within 4Å: Chain 6: A.34, V.37, F.38, L.42, I.45, R.49 Chain A: L.76, G.77, I.92 Chain D: L.33 Ligands: LMT.12, LMT.33, LMT.39, LDA.115 Ligand excluded by PLIP LMT.23: 13 residues within 4Å: Chain B: L.168, M.169, L.286, L.287, G.289, T.290, V.291 Chain C: M.1, V.2, L.12, A.16 Ligands: LMT.72, LMT.73 Ligand excluded by PLIP LMT.24: 11 residues within 4Å: Chain 5: F.7 Chain A: F.124, S.240 Chain B: E.3, Y.4, Q.5, N.6, I.7, F.8 Chain C: K.197 Ligands: LMT.29 Ligand excluded by PLIP LMT.29: 13 residues within 4Å: Chain 5: S.5, F.7, P.50 Chain B: F.8, Q.10, L.39, L.40, W.42, F.43 Chain C: G.145, K.146, V.198 Ligands: LMT.24 Ligand excluded by PLIP LMT.30: 15 residues within 4Å: Chain B: N.301 Chain C: F.7, G.8, N.9, F.10, L.15, Y.18, S.19, I.22 Chain L: M.30, L.33, S.37 Chain N: L.26 Ligands: PGV.17, LMT.60 Ligand excluded by PLIP LMT.33: 12 residues within 4Å: Chain A: G.77, G.78, Q.88, T.91, W.143 Chain D: L.36, S.37, P.39, N.42, E.45 Ligands: LMT.11, LMT.15 Ligand excluded by PLIP LMT.35: 6 residues within 4Å: Chain D: M.1, S.2, F.4 Chain E: H.21, M.25 Chain G: L.30 Ligand excluded by PLIP LMT.39: 20 residues within 4Å: Chain A: F.23, V.37, A.38, F.41, F.42 Chain D: F.23, L.26, L.27, V.29, M.30 Chain F: F.17, V.18, G.21, V.22, F.25 Ligands: LMT.11, LMT.12, LMT.15, BCL.38, 01.42 Ligand excluded by PLIP LMT.41: 8 residues within 4Å: Chain F: M.1, S.2, F.4 Chain G: H.21, M.25, W.29 Ligands: BCL.46, 01.51 Ligand excluded by PLIP LMT.48: 6 residues within 4Å: Chain H: M.1, F.4 Chain I: H.21, M.25, W.29 Ligands: BCL.53 Ligand excluded by PLIP LMT.50: 7 residues within 4Å: Chain I: V.34, V.37, A.38, A.41, I.44 Ligands: BCL.43, 01.51 Ligand excluded by PLIP LMT.52: 9 residues within 4Å: Chain A: W.60 Chain H: M.30, I.34 Chain J: L.33, L.36, S.37, N.42, E.45 Ligands: PGV.5 Ligand excluded by PLIP LMT.54: 9 residues within 4Å: Chain J: M.1, S.2, F.4 Chain K: H.21, M.25, W.29 Chain M: L.30, F.31 Ligands: 01.64 Ligand excluded by PLIP LMT.60: 10 residues within 4Å: Chain J: I.34, S.37 Chain L: L.26, M.30, L.33, L.36, S.37, N.42, E.45 Ligands: LMT.30 Ligand excluded by PLIP LMT.66: 12 residues within 4Å: Chain C: M.1, V.4, F.10, D.11, L.12 Chain N: I.34, S.37, T.38, P.39 Chain P: N.42, E.45 Ligands: LMT.73 Ligand excluded by PLIP LMT.72: 7 residues within 4Å: Chain B: I.164 Chain P: L.33, S.37, T.38 Ligands: LMT.23, LMT.73, LMT.79 Ligand excluded by PLIP LMT.73: 8 residues within 4Å: Chain C: M.1 Chain P: L.33, L.36, S.37, N.42 Ligands: LMT.23, LMT.66, LMT.72 Ligand excluded by PLIP LMT.79: 12 residues within 4Å: Chain B: Y.102, G.103, L.104, S.105 Chain P: I.34 Chain R: L.33, L.36, S.37, P.39, N.42 Ligands: LMT.72, 01.78 Ligand excluded by PLIP LMT.81: 10 residues within 4Å: Chain B: S.55, L.56, L.136, Q.139 Chain R: R.14, R.15, V.18, A.19 Ligands: PGV.27, PGV.74 Ligand excluded by PLIP LMT.102: 9 residues within 4Å: Chain A: P.271, W.272, N.275 Chain Z: M.30, L.33, I.34, S.37 Ligands: PGV.13, LMT.107 Ligand excluded by PLIP LMT.107: 15 residues within 4Å: Chain 1: F.25, V.29, L.33, L.36, S.37, N.42, E.45 Chain 5: F.25, A.28, G.29, V.34, V.38 Chain Z: M.30, I.34 Ligands: LMT.102 Ligand excluded by PLIP LMT.114: 9 residues within 4Å: Chain 5: F.18, G.22, I.23, A.26, G.30, H.31, W.32, L.36 Ligands: PGV.6 Ligand excluded by PLIP LMT.117: 5 residues within 4Å: Chain 6: K.29, G.32, W.33, G.36, V.37 Ligand excluded by PLIP

1 x FE: FE (III) ION(Non-covalent)

FE.21: 5 residues within 4Å: Chain A: H.191, H.231 Chain B: H.220, E.235, H.267 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.220, B:E.235, B:H.267, A:H.191, A:H.231

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.25: 19 residues within 4Å: Chain A: N.200, P.201, K.203 Chain B: G.144, K.145, H.146, W.149, L.152, W.156, R.268, W.272, L.279 Chain C: F.20, F.23, G.26, L.27, Y.30 Ligands: CDL.59, CDL.67 22 PLIP interactions: 7 interactions with chain C, 15 interactions with chain B Hydrophobic interactions: C:F.20, C:F.23, C:F.23, C:L.27, C:Y.30, C:Y.30, C:Y.30, B:W.149, B:W.149, B:W.149, B:L.152, B:W.156, B:W.156, B:W.156, B:W.272, B:W.272, B:L.279 Hydrogen bonds: B:K.145 Salt bridges: B:H.146, B:H.146, B:H.146, B:R.268 CDL.28: 19 residues within 4Å: Chain A: V.221, G.222, Y.223 Chain B: S.31, G.32, V.33, G.34, L.48, G.49, I.51, Y.52, L.53, G.57, L.61, W.130, R.133 Chain V: R.15 Ligands: BCL.19, BPH.20 12 PLIP interactions: 10 interactions with chain B, 1 interactions with chain V, 1 interactions with chain A Hydrophobic interactions: B:I.51, B:L.53, B:L.61, B:L.61, B:L.61, B:W.130, B:W.130, B:W.130, A:V.221 Hydrogen bonds: B:S.31, B:G.49, V:R.15 CDL.59: 23 residues within 4Å: Chain C: I.22, A.25, G.26, Y.29, P.55, F.56, P.57, L.58 Chain J: F.11, D.12, R.15, V.16 Chain L: D.12, R.14, R.15, V.18, A.19, V.22, L.26 Chain N: F.25 Ligands: CDL.25, PGV.62, CDL.67 15 PLIP interactions: 1 interactions with chain N, 7 interactions with chain L, 5 interactions with chain C, 2 interactions with chain J Hydrophobic interactions: N:F.25, L:A.19, L:L.26, L:L.26, C:I.22, C:A.25, C:Y.29, C:F.56, C:P.57, J:R.15, J:V.16 Hydrogen bonds: L:D.12, L:R.15 Salt bridges: L:R.14, L:R.15 CDL.67: 11 residues within 4Å: Chain B: R.268 Chain C: G.26, Y.29, Y.30, E.34, R.37 Chain L: R.15 Chain N: R.15 Ligands: CDL.25, CDL.59, PGV.62 10 PLIP interactions: 1 interactions with chain B, 5 interactions with chain C, 3 interactions with chain N, 1 interactions with chain L Salt bridges: B:R.268, N:R.15, L:R.15 Hydrophobic interactions: C:Y.29, C:Y.30 Hydrogen bonds: C:Y.30, C:E.34, C:R.37, N:R.15, N:R.15

27 x 01: (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,8,10,12,14,16,18,20,22,26,30-dodecaene

01.26: 28 residues within 4Å: Chain B: F.68, I.71, G.72, F.75, W.76, L.90, F.106, L.117, S.120, F.121, M.123, F.124, W.158, M.159, L.161, G.162, F.163, W.172, V.176, Y.178, G.179, I.180, H.183 Chain R: M.30 Ligands: PGV.13, BCL.16, PGV.27, LDA.82 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:F.68, B:F.68, B:I.71, B:F.75, B:L.90, B:F.106, B:F.106, B:L.117, B:F.121, B:W.158, B:W.158, B:L.161, B:F.163, B:W.172, B:V.176, B:Y.178, B:I.180 01.37: 24 residues within 4Å: Chain 6: R.20, V.23, A.24, M.27 Chain D: Q.20, F.23, L.24, L.27, M.30 Chain E: V.23, Y.24, G.27, L.28, L.30, F.31 Chain F: F.25, A.28, V.29, H.32, L.36, W.43 Ligands: BCL.34, BCL.36, BCL.38 15 PLIP interactions: 6 interactions with chain F, 3 interactions with chain 6, 2 interactions with chain D, 4 interactions with chain E Hydrophobic interactions: F:F.25, F:A.28, F:V.29, F:H.32, F:L.36, F:W.43, 6:R.20, 6:V.23, 6:A.24, D:F.23, D:L.27, E:Y.24, E:L.28, E:L.28, E:F.31 01.40: 26 residues within 4Å: Chain D: F.4, K.6, I.7, I.10 Chain E: L.7 Chain F: F.17, Q.20, F.23, L.24, L.27 Chain G: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain H: F.25, A.28, V.29, H.32, L.33, L.36 Ligands: 01.42, BCL.43, BCL.46 24 PLIP interactions: 4 interactions with chain D, 7 interactions with chain G, 6 interactions with chain H, 6 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: D:F.4, D:K.6, D:K.6, D:I.7, G:E.19, G:L.20, G:V.23, G:Y.24, G:L.28, G:L.28, G:F.31, H:F.25, H:A.28, H:V.29, H:H.32, H:L.33, H:L.36, F:F.17, F:F.23, F:F.23, F:L.24, F:L.24, F:L.27, E:L.7 01.42: 11 residues within 4Å: Chain E: F.49 Chain F: F.17 Chain G: F.31, V.34, A.38, V.42, W.45 Ligands: BCL.36, BCL.38, LMT.39, 01.40 7 PLIP interactions: 4 interactions with chain G, 3 interactions with chain E Hydrophobic interactions: G:F.31, G:V.34, G:A.38, G:V.42, E:F.49, E:F.49, E:F.49 01.47: 25 residues within 4Å: Chain F: K.3, F.4, K.6, I.7, I.10 Chain G: L.7 Chain H: F.17, Q.20, F.23, L.24, L.27 Chain I: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain J: F.25, A.28, V.29, H.32, L.33 Ligands: BCL.49, BCL.53 20 PLIP interactions: 7 interactions with chain I, 4 interactions with chain H, 1 interactions with chain G, 5 interactions with chain J, 3 interactions with chain F Hydrophobic interactions: I:E.19, I:L.20, I:V.23, I:Y.24, I:L.28, I:L.28, I:F.31, H:F.17, H:F.23, H:L.24, H:L.27, G:L.7, J:F.25, J:A.28, J:V.29, J:H.32, J:L.33, F:F.4, F:K.6, F:K.6 01.51: 12 residues within 4Å: Chain G: F.49 Chain H: F.17 Chain I: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: LMT.41, BCL.43, BCL.46, LMT.50 10 PLIP interactions: 7 interactions with chain I, 3 interactions with chain G Hydrophobic interactions: I:F.31, I:V.34, I:A.38, I:A.41, I:V.42, I:W.45, I:W.45, G:F.49, G:F.49, G:F.49 01.55: 24 residues within 4Å: Chain H: K.6, I.7, I.10 Chain J: F.17, Q.20, F.23, L.24, L.27, M.30 Chain K: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain L: F.25, A.28, V.29, H.32 Ligands: BCL.53, 01.57, BCL.58, BCL.61 19 PLIP interactions: 5 interactions with chain J, 8 interactions with chain K, 4 interactions with chain L, 2 interactions with chain H Hydrophobic interactions: J:F.17, J:F.23, J:L.24, J:L.24, J:L.27, K:E.19, K:L.20, K:V.23, K:Y.24, K:L.28, K:L.28, K:L.28, K:F.31, L:F.25, L:A.28, L:V.29, L:H.32, H:K.6, H:K.6 01.56: 25 residues within 4Å: Chain J: K.3, F.4, K.6, I.7, I.10 Chain L: F.17, Q.20, F.23, L.24, L.27, M.30 Chain M: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain N: A.28, V.29, H.32, L.33, L.36 Ligands: BCL.65, BCL.68 25 PLIP interactions: 4 interactions with chain J, 5 interactions with chain N, 7 interactions with chain L, 9 interactions with chain M Hydrophobic interactions: J:K.6, J:K.6, J:I.7, J:I.7, N:A.28, N:V.29, N:H.32, N:L.33, N:L.36, L:F.17, L:F.17, L:F.23, L:F.23, L:L.24, L:L.24, L:L.27, M:E.19, M:L.20, M:V.23, M:V.23, M:V.23, M:Y.24, M:L.28, M:L.28, M:F.31 01.57: 11 residues within 4Å: Chain I: F.49 Chain J: K.50 Chain K: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: BCL.49, BCL.53, 01.55 10 PLIP interactions: 7 interactions with chain K, 3 interactions with chain I Hydrophobic interactions: K:F.31, K:V.34, K:A.38, K:A.41, K:V.42, K:W.45, K:W.45, I:F.49, I:F.49, I:F.49 01.63: 24 residues within 4Å: Chain L: F.4, K.6, I.7, I.10 Chain M: L.7 Chain N: F.17, Q.20, F.23, L.24, L.27, M.30 Chain O: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain P: A.28, V.29, H.32, L.33 Ligands: BCL.71, BCL.75 21 PLIP interactions: 4 interactions with chain L, 4 interactions with chain P, 7 interactions with chain O, 5 interactions with chain N, 1 interactions with chain M Hydrophobic interactions: L:K.6, L:K.6, L:I.7, L:I.7, P:A.28, P:V.29, P:H.32, P:L.33, O:L.20, O:L.20, O:V.23, O:Y.24, O:L.28, O:L.28, O:F.31, N:F.17, N:F.23, N:L.24, N:L.24, N:L.27, M:L.7 01.64: 12 residues within 4Å: Chain K: F.49 Chain L: F.17, K.50 Chain M: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: LMT.54, BCL.58, BCL.61 8 PLIP interactions: 4 interactions with chain M, 1 interactions with chain L, 3 interactions with chain K Hydrophobic interactions: M:F.31, M:V.34, M:V.42, M:W.45, L:F.17, K:F.49, K:F.49, K:F.49 01.70: 12 residues within 4Å: Chain M: F.49 Chain N: F.17, K.50 Chain O: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: PGV.62, BCL.65, BCL.68 10 PLIP interactions: 5 interactions with chain O, 4 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: O:F.31, O:V.34, O:V.42, O:W.45, O:W.45, M:F.49, M:F.49, M:F.49, M:F.49, N:F.17 01.76: 11 residues within 4Å: Chain O: F.49 Chain P: K.50 Chain Q: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: LDA.69, BCL.71, BCL.75 9 PLIP interactions: 6 interactions with chain Q, 3 interactions with chain O Hydrophobic interactions: Q:F.31, Q:V.34, Q:A.38, Q:A.41, Q:V.42, Q:W.45, O:F.49, O:F.49, O:F.49 01.78: 21 residues within 4Å: Chain N: K.6, I.7, I.10 Chain P: F.17, Q.20, F.23, L.24, L.27 Chain Q: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain R: A.28, H.32 Ligands: BCL.75, BCL.77, LMT.79, BCL.80 20 PLIP interactions: 8 interactions with chain Q, 6 interactions with chain P, 4 interactions with chain N, 2 interactions with chain R Hydrophobic interactions: Q:E.19, Q:V.23, Q:V.23, Q:V.23, Q:Y.24, Q:L.28, Q:L.28, Q:F.31, P:F.17, P:F.23, P:F.23, P:L.24, P:L.27, P:L.27, N:K.6, N:K.6, N:I.7, N:I.10, R:A.28, R:H.32 01.83: 13 residues within 4Å: Chain Q: F.49 Chain R: F.17, G.21, K.50 Chain S: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: PGV.74, BCL.77, BCL.80 10 PLIP interactions: 5 interactions with chain S, 1 interactions with chain R, 4 interactions with chain Q Hydrophobic interactions: S:F.31, S:V.34, S:A.38, S:A.41, S:V.42, R:F.17, Q:F.49, Q:F.49, Q:F.49, Q:F.49 01.85: 21 residues within 4Å: Chain P: F.4, K.6, I.7, I.10 Chain R: F.17, F.23, L.24, L.27, M.30 Chain S: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain T: A.28, H.32 Ligands: BCL.80, BCL.84, BCL.86 20 PLIP interactions: 8 interactions with chain S, 6 interactions with chain R, 2 interactions with chain T, 4 interactions with chain P Hydrophobic interactions: S:E.19, S:L.20, S:L.20, S:L.20, S:V.23, S:Y.24, S:L.28, S:F.31, R:F.17, R:F.23, R:F.23, R:L.24, R:L.27, R:L.27, T:A.28, T:H.32, P:F.4, P:K.6, P:K.6, P:I.7 01.87: 12 residues within 4Å: Chain S: F.49 Chain T: F.17, Q.20, G.21, K.50 Chain U: F.31, V.34, A.38, V.42, W.45 Ligands: BCL.84, BCL.86 11 PLIP interactions: 4 interactions with chain S, 1 interactions with chain T, 6 interactions with chain U Hydrophobic interactions: S:F.49, S:F.49, S:F.49, S:F.49, T:Q.20, U:F.31, U:V.34, U:A.38, U:V.42, U:W.45, U:W.45 01.88: 23 residues within 4Å: Chain R: F.4, K.6, I.7, I.10 Chain T: F.17, Q.20, F.23, L.24, L.27 Chain U: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain V: F.25, A.28, V.29, H.32 Ligands: BCL.91, BCL.93, 01.95 18 PLIP interactions: 4 interactions with chain V, 5 interactions with chain T, 5 interactions with chain U, 4 interactions with chain R Hydrophobic interactions: V:F.25, V:A.28, V:V.29, V:H.32, T:F.17, T:F.23, T:F.23, T:L.24, T:L.27, U:E.19, U:V.23, U:L.28, U:L.28, U:F.31, R:F.4, R:K.6, R:K.6, R:I.7 01.90: 24 residues within 4Å: Chain T: K.6, I.7, I.10 Chain U: L.7 Chain V: F.17, Q.20, F.23, L.24, L.27, M.30 Chain W: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain X: A.28, V.29, H.32 Ligands: 01.95, BCL.96, BCL.97, 01.100 23 PLIP interactions: 1 interactions with chain U, 5 interactions with chain V, 3 interactions with chain X, 5 interactions with chain T, 9 interactions with chain W Hydrophobic interactions: U:L.7, V:F.17, V:F.23, V:L.24, V:L.24, V:L.27, X:A.28, X:V.29, X:H.32, T:K.6, T:K.6, T:I.7, T:I.10, T:I.10, W:E.19, W:L.20, W:L.20, W:V.23, W:V.23, W:Y.24, W:L.28, W:L.28, W:F.31 01.95: 15 residues within 4Å: Chain U: F.49 Chain V: F.17, Q.20, K.50 Chain W: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: 01.88, LDA.89, 01.90, BCL.91, BCL.93 12 PLIP interactions: 7 interactions with chain W, 1 interactions with chain V, 4 interactions with chain U Hydrophobic interactions: W:F.31, W:V.34, W:A.38, W:A.41, W:V.42, W:W.45, W:W.45, V:F.17, U:F.49, U:F.49, U:F.49, U:F.49 01.98: 21 residues within 4Å: Chain V: K.6, I.7, I.10 Chain W: L.7 Chain X: F.17, Q.20, F.23, L.24, L.27 Chain Y: E.19, L.20, V.23, G.27, L.28, F.31 Chain Z: A.28, V.29, H.32 Ligands: BCL.101, BCL.103, 01.105 18 PLIP interactions: 5 interactions with chain X, 6 interactions with chain Y, 3 interactions with chain Z, 3 interactions with chain V, 1 interactions with chain W Hydrophobic interactions: X:F.17, X:F.23, X:L.24, X:L.24, X:L.27, Y:E.19, Y:L.20, Y:V.23, Y:V.23, Y:L.28, Y:F.31, Z:A.28, Z:V.29, Z:H.32, V:K.6, V:I.7, V:I.7, W:L.7 01.99: 23 residues within 4Å: Chain 0: E.19, L.20, V.23, G.27, L.28, F.31 Chain 1: A.28, V.29, H.32, W.43 Chain X: K.3, F.4, K.6, I.7, I.10 Chain Z: F.17, Q.20, F.23, L.24, L.27, M.30 Ligands: BCL.106, BCL.108 18 PLIP interactions: 3 interactions with chain Z, 6 interactions with chain X, 5 interactions with chain 0, 4 interactions with chain 1 Hydrophobic interactions: Z:F.23, Z:F.23, Z:L.27, X:F.4, X:F.4, X:K.6, X:K.6, X:I.7, X:I.7, 0:E.19, 0:L.20, 0:V.23, 0:L.28, 0:F.31, 1:A.28, 1:V.29, 1:H.32, 1:W.43 01.100: 13 residues within 4Å: Chain W: F.49 Chain X: F.17, K.50 Chain Y: F.31, V.34, A.38, A.41, V.42, W.45 Ligands: 01.90, PGV.94, BCL.96, BCL.97 11 PLIP interactions: 1 interactions with chain X, 6 interactions with chain Y, 4 interactions with chain W Hydrophobic interactions: X:F.17, Y:F.31, Y:V.34, Y:A.38, Y:A.41, Y:V.42, Y:W.45, W:F.49, W:F.49, W:F.49, W:F.49 01.104: 24 residues within 4Å: Chain 1: Q.20, F.23, L.24, L.27, M.30 Chain 2: E.19, L.20, V.23, Y.24, G.27, L.28, F.31 Chain 3: A.28, V.29, H.32, W.43 Chain Z: K.3, F.4, K.6, I.7, I.10 Ligands: 01.109, BCL.110, BCL.111 20 PLIP interactions: 4 interactions with chain 1, 8 interactions with chain 2, 4 interactions with chain Z, 4 interactions with chain 3 Hydrophobic interactions: 1:F.23, 1:L.24, 1:L.24, 1:L.27, 2:E.19, 2:L.20, 2:L.20, 2:V.23, 2:Y.24, 2:Y.24, 2:L.28, 2:F.31, Z:F.4, Z:K.6, Z:I.7, Z:I.7, 3:A.28, 3:V.29, 3:H.32, 3:W.43 01.105: 12 residues within 4Å: Chain 0: F.31, V.34, A.38, A.41, V.42, W.45 Chain Y: F.49 Chain Z: F.17, K.50 Ligands: 01.98, BCL.101, BCL.103 9 PLIP interactions: 5 interactions with chain 0, 1 interactions with chain Z, 3 interactions with chain Y Hydrophobic interactions: 0:F.31, 0:V.34, 0:A.38, 0:A.41, 0:V.42, Z:F.17, Y:F.49, Y:F.49, Y:F.49 01.109: 10 residues within 4Å: Chain 0: F.49 Chain 1: F.17 Chain 2: F.31, V.34, A.38, V.42, W.45 Ligands: 01.104, BCL.106, BCL.108 12 PLIP interactions: 5 interactions with chain 2, 1 interactions with chain 1, 6 interactions with chain 0 Hydrophobic interactions: 2:F.31, 2:V.34, 2:V.42, 2:W.45, 2:W.45, 1:F.17, 0:F.49, 0:F.49, 0:F.49, 0:F.49, 0:F.49, 0:F.49 01.112: 9 residues within 4Å: Chain 2: F.49 Chain 3: F.17 Chain 4: F.31, V.34, A.38, V.42, W.45 Ligands: BCL.110, BCL.111 8 PLIP interactions: 4 interactions with chain 4, 1 interactions with chain 3, 3 interactions with chain 2 Hydrophobic interactions: 4:V.34, 4:A.38, 4:V.42, 4:W.45, 3:F.17, 2:F.49, 2:F.49, 2:F.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y.-L. et al., From Genome to structure: Elucidating Neurosporene Production in the Rhodobacter sphaeroides G1C Mutant. To Be Published

Release Date

2025-11-19

Peptides

Reaction center protein L chain: A
Reaction center protein M chain: B
Reaction center protein H chain: C
Light-harvesting protein B-875 alpha chain: DFHJLNPRTVXZ13
Antenna pigment protein beta chain: EGIKMOQSUWY024
protein-U: 5
Intrinsic membrane protein PufX: 6

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
H

D
A

F
B

H
C

J
D

L
E

N
F

P
G

R
I

T
J

V
K

X
N

Z
O

1
P

3
Q

E
a

G
b

I
c

K
d

M
e

O
f

Q
g

S
i

U
j

W
k

Y
n

0
o

2
p

4
q

5
U

6
X

Membrane

We predict this structure to be a membrane protein.
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Reaction center protein L chain

Reaction center protein M chain

Reaction center protein H chain

Light-harvesting protein B-875 alpha chain

Antenna pigment protein beta chain

protein-U

Intrinsic membrane protein PufX

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