SMTL ID : 1eqz.1

X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.5 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-oligomer

Ligands

7 x K: POTASSIUM ION(Non-functional Binders)(Non-covalent)

K.1: 2 residues within 4Å: Chain A: G.97, G.98 No protein-ligand interaction detected (PLIP) K.11: 2 residues within 4Å: Chain B: A.109, A.110 No protein-ligand interaction detected (PLIP) K.12: 3 residues within 4Å: Chain B: C.69, G.70 Chain C: K.125 No protein-ligand interaction detected (PLIP) K.13: 1 residues within 4Å: Chain B: G.71 No protein-ligand interaction detected (PLIP) K.14: 1 residues within 4Å: Chain B: G.81 No protein-ligand interaction detected (PLIP) K.15: 3 residues within 4Å: Chain B: G.81, A.82 Chain F: K.32 No protein-ligand interaction detected (PLIP) K.16: 2 residues within 4Å: Chain B: A.29, A.30 No protein-ligand interaction detected (PLIP)

15 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.2: 1 residues within 4Å: Chain A: G.134 No protein-ligand interaction detected (PLIP) MN.3: 1 residues within 4Å: Chain A: G.121 No protein-ligand interaction detected (PLIP) MN.4: 2 residues within 4Å: Chain A: G.70, G.71 No protein-ligand interaction detected (PLIP) MN.5: 2 residues within 4Å: Chain A: G.39, G.40 No protein-ligand interaction detected (PLIP) MN.6: 2 residues within 4Å: Chain A: G.137, G.138 No protein-ligand interaction detected (PLIP) MN.7: 2 residues within 4Å: Chain A: A.99, G.100 No protein-ligand interaction detected (PLIP) MN.8: 1 residues within 4Å: Chain A: A.1 No protein-ligand interaction detected (PLIP) MN.9: 2 residues within 4Å: Chain A: A.17, G.18 No protein-ligand interaction detected (PLIP) MN.10: 2 residues within 4Å: Chain A: A.124, G.125 No protein-ligand interaction detected (PLIP) MN.17: 2 residues within 4Å: Chain B: G.134, G.135 No protein-ligand interaction detected (PLIP) MN.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MN.19: 1 residues within 4Å: Chain B: G.100 No protein-ligand interaction detected (PLIP) MN.20: 2 residues within 4Å: Chain B: G.39, G.40 No protein-ligand interaction detected (PLIP) MN.21: 1 residues within 4Å: Chain B: G.121 No protein-ligand interaction detected (PLIP) MN.22: 1 residues within 4Å: Chain B: A.1 No protein-ligand interaction detected (PLIP)

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.23: 6 residues within 4Å: Chain C: G.45, A.46, G.47, A.48 Chain D: T.91, S.92 Ligand excluded by PLIP CL.24: 6 residues within 4Å: Chain G: G.45, A.46, G.47, A.48 Chain H: T.91, S.92 Ligand excluded by PLIP

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.25: 4 residues within 4Å: Chain I: E.74, Q.77, D.78 Chain J: L.23 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Harp, J.M. et al., Asymmetries in the nucleosome core particle at 2.5 A resolution. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-04-17

Peptides

PROTEIN (HISTONE H2A): CG
PROTEIN (HISTONE H2B): DH
PROTEIN (HISTONE H3): EI
PROTEIN (HISTONE H4): FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

PROTEIN (HISTONE H2A)

PROTEIN (HISTONE H2B)

PROTEIN (HISTONE H3)

PROTEIN (HISTONE H4)

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