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SMTL ID : 9jwd.1

Crystal structure of RNAs A treated with sodium cyanide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x CYN: CYANIDE ION(Non-covalent)

CYN.1:

2 residues within 4Å:

Chain A: H.119, F.120

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:F.120
Water bridges: A:F.120

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

3 residues within 4Å:

Chain A: M.29, S.32, R.33

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:S.32, A:R.33
Water bridges: A:N.34

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3:	2 residues within 4Å: Chain A: R.10, N.34 Ligand excluded by PLIP
CL.4:	4 residues within 4Å: Chain A: H.12, N.44, T.45, F.120 Ligand excluded by PLIP
CL.5:	1 residues within 4Å: Chain A: T.3 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6:

2 residues within 4Å:

Chain A: T.3, A.4

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:A.4
Water bridges: A:A.5

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Shah, N. et al., Cyanide mediated conformational changes resulted in the displacement of sulfate ion from the active site of bovine pancreatic ribonuclease A. Biochem.Biophys.Res.Commun. (2024)

Release Date

2024-12-04

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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