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SMTL ID : 9gys.2 (1 other biounit)

X-ray structure of the adduct formed upon reaction of RNase A with [Ru2(D-p-FPhF)(O2CCH3)2(O2CO)] complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x 01: [Ru2-N,N'-diphenylformamidinate(O2CCH3)2(O2CO)] complex

01.1:	5 residues within 4Å: Chain A: Q.74, Y.76, T.78, H.105, V.124 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:V.124 Hydrogen bonds: A:T.78 Water bridges: A:H.105 Salt bridges: A:H.105 pi-Cation interactions: A:H.105 Metal complexes: A:H.105
01.2:	6 residues within 4Å: Chain A: Q.11, H.12, K.41, V.118, H.119, F.120 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.11, A:K.41, A:F.120 Water bridges: A:Q.11 Metal complexes: A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ferraro, G. et al., Deciphering the role of neutral diruthenium complexes in protein binding. Int.J.Biol.Macromol. (2024)

Release Date

2024-12-11

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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