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SMTL ID : 9gys.1 (1 other biounit)

X-ray structure of the adduct formed upon reaction of RNase A with [Ru2(D-p-FPhF)(O2CCH3)2(O2CO)] complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:

7 residues within 4Å:

Chain A: Q.11, H.12, K.41, V.118, H.119, F.120
Ligands: 01.4

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:Q.11, A:V.118, A:F.120
Salt bridges: A:H.12, A:K.41, A:H.119

3 x 01: [Ru2-N,N'-diphenylformamidinate(O2CCH3)2(O2CO)] complex

01.2:	5 residues within 4Å: Chain A: Q.74, Y.76, T.78, H.105, V.124 2 PLIP interactions: 2 interactions with chain A, Hydrogen bonds: A:T.78 Metal complexes: A:H.105
01.3:	3 residues within 4Å: Chain A: A.6, E.9, L.51 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.9, A:E.9, A:E.9, A:Q.55 Water bridges: A:T.3 Metal complexes: A:E.9, A:E.9
01.4:	2 residues within 4Å: Chain A: H.119 Ligands: SO4.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.119

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ferraro, G. et al., Deciphering the role of neutral diruthenium complexes in protein binding. Int.J.Biol.Macromol. (2024)

Release Date

2024-12-11

Peptides

Ribonuclease pancreatic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Ribonuclease pancreatic

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