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SMTL ID : 1f66.1

2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

15 x MN: MANGANESE (II) ION(Non-functional Binders)(Non-covalent)

MN.1:	2 residues within 4Å: Chain A: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.2:	2 residues within 4Å: Chain A: G.70, G.71 No protein-ligand interaction detected (PLIP)
MN.3:	2 residues within 4Å: Chain A: A.99, G.100 No protein-ligand interaction detected (PLIP)
MN.4:	2 residues within 4Å: Chain A: G.121, G.122 No protein-ligand interaction detected (PLIP)
MN.5:	1 residues within 4Å: Chain A: G.134 No protein-ligand interaction detected (PLIP)
MN.6:	2 residues within 4Å: Chain A: G.137, G.138 No protein-ligand interaction detected (PLIP)
MN.7:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
MN.8:	2 residues within 4Å: Chain B: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.9:	2 residues within 4Å: Chain B: G.71, A.72 No protein-ligand interaction detected (PLIP)
MN.10:	1 residues within 4Å: Chain B: G.100 No protein-ligand interaction detected (PLIP)
MN.11:	2 residues within 4Å: Chain B: G.121, G.122 No protein-ligand interaction detected (PLIP)
MN.12:	2 residues within 4Å: Chain B: A.133, G.134 No protein-ligand interaction detected (PLIP)
MN.13:	2 residues within 4Å: Chain E: H.113, H.115 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.113, H₂O.7
MN.14:	1 residues within 4Å: Chain G: D.78 5 PLIP interactions: 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:D.78, H₂O.11, H₂O.11, H₂O.11, H₂O.12
MN.15:	3 residues within 4Å: Chain I: H.113, I.114, H.115 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:H.113, I:H.115

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Suto, R.K. et al., Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat.Struct.Biol. (2000)

Release Date

2000-11-27

Peptides

HISTONE H3: CG
HISTONE H4: DH
HISTONE H2A.Z: EI
HISTONE H2B: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

HISTONE H3

HISTONE H4

HISTONE H2A.Z

HISTONE H2B

Toggle Identical (FJ)

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1eqz.1 | 1hq3.1 | 1tzy.1 | 1u35.1 | 2aro.1 | 2cv5.1 | 2f8n.1 | 3nqu.1 | 3r45.1 | 4hga.1 | 4kgc.1 | 4ld9.1 | 4z2m.1 | 4zux.1 | 4zux.2 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5e5a.1 | 5kgf.1 | 5o9g.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5x0x.1 more...less...

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