- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 2 x PHE- ALA- PRO- GLY- ASN- TYR- PRO- ALA- LEU: PROTEIN (NUCLEOCAPSID PROTEIN)(Non-covalent)
- 2 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG-FUL.2: 4 residues within 4Å:- Chain A: Q.54, K.173, N.174, N.176
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.54, A:K.173, A:N.174, A:N.174, A:N.176
NAG-NAG-FUL.10: 4 residues within 4Å:- Chain C: Q.54, K.173, N.174, N.176
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Q.54, C:K.173, C:N.174, C:N.174, C:N.176
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 3 residues within 4Å:- Chain A: R.108, R.169
- Chain C: Y.262
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain C- Water bridges: A:E.161, A:R.169, A:R.169
- Salt bridges: A:R.108, A:R.169
- Hydrogen bonds: C:Y.262
PO4.5: 5 residues within 4Å:- Chain A: V.12, R.14, R.21
- Chain B: H.34
- Ligands: MRD.6
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Salt bridges: B:H.34, A:R.14, A:R.21
- Water bridges: A:R.21
PO4.12: 3 residues within 4Å:- Chain A: Y.262
- Chain C: R.108, R.169
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain A- Water bridges: C:E.161, C:R.169, C:R.169
- Salt bridges: C:R.108, C:R.169
- Hydrogen bonds: A:Y.262
PO4.13: 5 residues within 4Å:- Chain C: V.12, R.14, R.21
- Chain D: H.34
- Ligands: MRD.14
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Water bridges: C:R.21
- Salt bridges: C:R.14, C:R.21, D:H.34
- 2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.6: 7 residues within 4Å:- Chain A: R.21, M.23
- Chain B: F.30, P.33, M.54, I.64
- Ligands: PO4.5
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:F.30, B:I.64
- Water bridges: B:H.34, B:I.35
- Hydrogen bonds: A:R.21
MRD.14: 7 residues within 4Å:- Chain C: R.21, M.23
- Chain D: F.30, P.33, M.54, I.64
- Ligands: PO4.13
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:F.30, D:I.64
- Water bridges: D:H.34, D:I.35
- Hydrogen bonds: C:R.21
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.7: 4 residues within 4Å:- Chain A: P.47, R.48, A.49, R.50
No protein-ligand interaction detected (PLIP)MPD.8: 8 residues within 4Å:- Chain A: H.188, T.190, W.204
- Chain B: S.11, H.13, P.14, P.15, M.99
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.11, B:M.99
- Hydrophobic interactions: A:W.204
MPD.15: 4 residues within 4Å:- Chain C: P.47, R.48, A.49, R.50
No protein-ligand interaction detected (PLIP)MPD.16: 8 residues within 4Å:- Chain C: H.188, T.190, W.204
- Chain D: S.11, H.13, P.14, P.15, M.99
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.11, D:M.99
- Hydrophobic interactions: C:W.204
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rudolph, M.G. et al., The crystal structures of K(bm1) and K(bm8) reveal that subtle changes in the peptide environment impact thermostability and alloreactivity. Immunity (2001)
- Release Date
- 2001-03-28
- Peptides
- H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN: AC
PROTEIN (BETA-2-MICROGLOBULIN): BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
SMTL ID : 1fzk.2 (1 other biounit)
MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN
Toggle Identical (AC)PROTEIN (BETA-2-MICROGLOBULIN)
Toggle Identical (BD)Related Entries With Identical Sequence
1bqh.1 | 1bqh.2 | 1cd1.1 | 1cd1.2 | 1fo0.1 | 1fzj.1 | 1fzj.2 | 1fzk.1 | 1fzm.1 | 1fzo.1 | 1g6r.1 | 1g6r.2 | 1g7p.1 | 1g7q.1 | 1hoc.1 | 1inq.1 | 1juf.1 | 1k8d.1 | 1kbg.1 | 1kj2.1 | 1kj2.2 | 1kj3.1 | 1kj3.2 | 1kpu.1 | 1kpv.1 | 1kpv.2 | 1ld9.1 | 1ld9.2 | 1ldp.1 | 1leg.1 more...less...1lek.1 | 1lk2.1 | 1mhc.1 | 1mhc.2 | 1mhc.3 | 1mwa.1 | 1mwa.2 | 1n3n.1 | 1n3n.2 | 1n3n.3 | 1n3n.4 | 1n3n.5 | 1n3n.6 | 1n59.1 | 1n59.2 | 1n5a.1 | 1n5a.2 | 1n5a.3 | 1n5a.4 | 1nan.1 | 1nez.1 | 1osz.1 | 1p1z.1 | 1pqz.1 | 1rk0.1 | 1rk1.1 | 1s7q.1 | 1s7r.1 | 1s7r.2 | 1s7s.1 | 1s7t.1 | 1s7t.2 | 1s7u.1 | 1s7u.2 | 1s7u.3 | 1s7u.4 | 1s7v.1 | 1s7v.2 | 1s7w.1 | 1s7w.2 | 1s7w.3 | 1s7w.4 | 1s7x.1 | 1s7x.2 | 1s7x.3 | 1s7x.4 | 1t0m.1 | 1t0m.2 | 1t0n.1 | 1t0n.2 | 1vac.1 | 1vad.1 | 1wbx.1 | 1wby.1 | 1wbz.1 | 1wbz.2 | 1zhb.1 | 1zhb.2 | 1zhb.3 | 1zhb.4 | 1zhn.1 | 2ckb.1 | 2ckb.2 | 2clv.1 | 2clv.2 | 2clz.1 | 2clz.2 | 2fo4.1 | 2mha.1 | 2mha.2 | 2vaa.1 | 2vab.1 | 2zsv.1 | 2zsv.2 | 2zsw.1 | 2zsw.2 | 2zsw.3 | 2zsw.4 | 3buy.1 | 3cc5.1 | 3cc5.2 | 3cch.1 | 3cch.2 | 3cch.3 | 3cch.4 | 3cch.5 | 3cch.6 | 3ch1.1 | 3ch1.2 | 3ch1.3 | 3ch1.4 | 3cpl.1 | 3cpl.2 | 3cvh.1 | 3cvh.2 | 3l3h.1 | 3p4m.1 | 3p4m.2 | 3p4n.1 | 3p4n.2 | 3p4o.1 | 3p4o.2 | 3p9l.1 | 3p9l.2 | 3p9m.1 | 3p9m.2 | 3pab.1 | 3pab.2 | 3pqy.1 | 3pqy.2 | 3pqy.3 | 3pqy.4 | 3pwu.1 | 3quk.1 | 3quk.2 | 3qul.1 | 3qul.2 | 3qul.3 | 3qul.4 | 3rol.1 | 3rol.2 | 3roo.1 | 3roo.2 | 3tbs.1 | 3tbs.2 | 3tbt.1 | 3tbt.2 | 3tbt.3 | 3tbt.4 | 3tbv.1 | 3tbv.2 | 3tbv.3 | 3tbv.4 | 3tbw.1 | 3tbw.2 | 3tbw.3 | 3tbw.4 | 3tby.1 | 3tby.2 | 3tby.3 | 3tby.4 | 4hs3.1 | 4iho.1 | 4iho.2 | 4l8d.1 | 4l8d.2 | 4nsk.1 | 4pv8.1 | 4pv8.2 | 4pv9.1 | 4pv9.2 | 4zus.1 | 4zut.1 | 4zuu.1 | 4zuv.1 | 4zuv.2 | 4zuw.1 | 5e8n.1 | 5e8n.2 | 5e8n.3 | 5e8n.4 | 5e8o.1 | 5e8o.2 | 5e8p.1 | 5e8p.2 | 5jwd.1 | 5jwe.1 | 5jwe.2 | 5jwe.3 | 5jwe.4 | 5mzm.1 | 5mzm.2 | 5til.1 | 5til.2 | 5tje.1 | 5tje.2 | 6g9r.1 | 6g9r.2 | 6g9r.3 | 6g9r.4 | 6gb5.1 | 6gb5.2 | 6gb7.3 | 6h6d.1 | 6h6d.2 | 6h6h.1 | 6h6h.2 | 6i8c.1 | 6l9m.1 | 6l9m.2 | 6l9m.3 | 6l9m.4 | 6l9n.1 | 6l9n.2 | 6l9n.3 | 6l9n.4 | 7lfi.1 | 7lfi.2 | 7lfj.1 | 7lfj.2 | 7lfk.1 | 7lfk.2 | 7lfl.1 | 7lfm.1 | 7lfm.2