SMTL ID : 3p4m.2 (1 other biounit)

Crystal Structure of H2-Kb in complex with the NP205-LCMV epitope YTVKYPNL, an 8-mer peptide from the LCMV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- THR- VAL- LYS- TYR- PRO- ASN- LEU: NP205-LCMV epitope, YTVKYPNL(Non-covalent)

TYR-THR-VAL-LYS-TYR-PRO-ASN-LEU.1: 26 residues within 4Å: Chain A: L.6, Y.8, V.10, E.25, R.63, E.64, K.67, N.71, S.74, F.75, D.78, T.81, L.82, Y.85, S.100, Q.115, Y.117, T.144, K.147, W.148, E.153, R.156, Y.160, T.164, W.168, Y.172 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:K.67, A:F.75, A:L.82, A:Y.117, A:W.148, A:E.153, A:Y.160, A:Y.160, A:T.164, A:W.168, A:W.168 Hydrogen bonds: A:Y.8, A:E.64, A:N.71, A:N.71, A:S.74, A:D.78, A:Y.85, A:S.100, A:S.100, A:R.156, A:R.156, A:Y.160, A:Y.172, A:Y.172 Water bridges: A:E.64, A:D.78, A:T.81, A:Y.160 Salt bridges: A:K.147 pi-Stacking: A:W.168 pi-Cation interactions: A:K.67

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.2: 3 residues within 4Å: Chain B: Y.26, S.57, Y.63 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.63 Hydrogen bonds: B:Y.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gras, S. et al., Crystal Structure of H2-Kb in complex with the NP205-LCMV epitope YTVKYPNL, an 8-mer peptide from the LCMV. To be Published

Release Date

2011-10-12

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

H-2 class I histocompatibility antigen, K-B alpha chain

Beta-2-microglobulin

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