SMTL ID : 6g9r.3 (3 other biounits)

Murine class I major histocompatibility complex H-2 Db in complex with self-antigen derived from dopamine monooxygenase.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x LYS- ALA- PRO- TYR- ASP- TYR- ALA- PRO- ILE: Dopamine beta-hydroxylase(Non-covalent)

LYS-ALA-PRO-TYR-ASP-TYR-ALA-PRO-ILE.1: 28 residues within 4Å: Chain A: M.5, Y.7, E.9, Y.45, Y.59, R.62, E.63, K.66, Q.70, W.73, S.77, N.80, L.81, Y.84, L.95, Q.97, S.99, F.116, Y.123, T.143, K.146, W.147, S.150, H.155, Y.156, Y.159, W.167, Y.171 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.7, A:K.66, A:W.73, A:W.73, A:L.81, A:Y.84, A:L.95, A:H.155, A:Y.159, A:W.167, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Q.97, A:T.143, A:K.146, A:Y.156, A:Y.159, A:Y.171 Salt bridges: A:K.146 pi-Stacking: A:H.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allerbring, E. et al., Structural basis for CD8+ T cells auto-reactivity in LCMV infection. to be published

Release Date

2019-04-24

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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