SMTL ID : 3cpl.1 (1 other biounit)

Crystal Structure of H-2Db in complex with a variant M6A of the NP366 peptide from influenza A virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- SER- ASN- GLU- ASN- ALA- GLU- THR- MET: NP366 peptide(Non-covalent)

ALA-SER-ASN-GLU-ASN-ALA-GLU-THR-MET.1: 26 residues within 4Å: Chain A: M.5, Y.7, Y.45, E.63, K.66, Q.70, W.73, F.74, S.77, N.80, L.81, Y.84, Q.97, F.116, Y.123, T.143, K.146, W.147, S.150, A.152, H.155, Y.156, Y.159, E.163, W.167, Y.171 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:K.66, A:W.73, A:T.143, A:Y.159 Hydrogen bonds: A:Y.45, A:E.63, A:K.66, A:Q.70, A:Q.70, A:S.77, A:N.80, A:Y.84, A:Q.97, A:Q.97, A:T.143, A:K.146, A:S.150, A:Y.156, A:Y.156, A:Y.159, A:Y.171 Water bridges: A:S.99, A:S.99 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kedzierska, K. et al., Complete modification of TCR specificity and repertoire selection does not perturb a CD8+ T cell immunodominance hierarchy. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-11-18

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

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