SMTL ID : 4pv9.1 (1 other biounit)

Crystal Structure of H2Kb-Q600V complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ABA- VAL- ILE- PHE- ALA- ASN- ILE: S598 peptide modified Q600V(Non-covalent)

ARG-ABA-VAL-ILE-PHE-ALA-ASN-ILE.1: 30 residues within 4Å: Chain A: L.5, Y.7, V.9, E.24, Y.45, R.62, E.63, K.66, N.70, S.73, F.74, V.76, D.77, T.80, L.81, Y.84, V.97, S.99, Q.114, Y.116, T.143, K.146, W.147, E.152, R.155, L.156, Y.159, T.163, W.167, Y.171 42 PLIP interactions: 42 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:V.9, A:K.66, A:F.74, A:D.77, A:T.80, A:L.81, A:Y.84, A:V.97, A:Y.116, A:T.143, A:W.147, A:L.156, A:Y.159, A:Y.159, A:W.167 Hydrogen bonds: A:R.62, A:R.62, A:E.63, A:K.66, A:N.70, A:N.70, A:D.77, A:D.77, A:Y.116, A:T.143, A:R.155, A:R.155, A:Y.159, A:Y.171 Water bridges: A:Y.7, A:E.58, A:Y.59, A:S.73, A:Y.116, A:K.146, A:W.147, A:E.152, A:Y.159 Salt bridges: A:E.63, A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trujillo, J.A. et al., Structural and functional correlates of enhanced antiviral immunity generated by heteroclitic CD8 T cell epitopes. J.Immunol. (2014)

Release Date

2014-04-23

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, K-B alpha chain

Beta-2-microglobulin

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